Evidence map›Paper›PMID 20164227›Full record

ArticleJournal of virology2010

Familial relationships in hyperthermo- and acidophilic archaeal viruses.

Lotta Johanna Happonen, Peter Redder, Xu Peng, Laila Johanne Reigstad, David Prangishvili, Sarah Jane Butcher

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. ICTV Virus Taxonomy Profile:The Journal of general virology · 2024
    Article
  2. Review
  3. Viruses of theFrontiers in microbiology · 2023
    Review
  4. Archaeal tyrosine recombinases.FEMS microbiology reviews · 2021
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lotta Johanna HapponenInstitute of Biotechnology and Department of Biosciences, Biocenter 3, P.O. Box 65 (Viikinkaari 1), FI-00014 University of Helsinki, Helsinki, Finland.
Peter Redder
Xu Peng
Laila Johanne Reigstad
David Prangishvili
Sarah Jane Butcher

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Archaea often live in extreme, harsh environments such as acidic hot springs and hypersaline waters. To date, only two icosahedrally symmetric, membrane-containing archaeal viruses, SH1 and Sulfolobus turreted icosahedral virus (STIV), have been described in detail. We report the sequence and three-dimensional structure of a third such virus isolated from a hyperthermoacidophilic crenarchaeon, Sulfolobus strain G4ST-2. Characterization of this new isolate revealed it to be similar to STIV on the levels of genome and structural organization. The genome organization indicates that these two viruses have diverged from a common ancestor. Interestingly, the prominent surface turrets of the two viruses are strikingly different. By sequencing and mass spectrometry, we mapped several large insertions and deletions in the known structural proteins that could account for these differences and showed that both viruses can infect the same host. A combination of genomic and proteomic analyses revealed important new insights into the structural organization of these viruses and added to our limited knowledge of archaeal virus life cycles and host-cell interactions.

Indexed as

Genome, ViralArchaeal VirusesCluster AnalysisDNA, ArchaealDNA, RibosomalDNA, ViralGene OrderMicroscopy, Electron, TransmissionModels, BiologicalModels, MolecularMolecular Sequence DataProteomeRNA, Ribosomal, 16SSequence Analysis, DNASequence HomologySulfolobusDNA, ArchaealDNA, RibosomalDNA, ViralProteomeRNA, Ribosomal, 16SViral Proteins

Identifiers

PMID20164227
PMCPMC2863766

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.