Evidence map›Paper›PMID 20164221›Full record

ArticleJournal of virology2010

Structure and function of a genetically engineered mimic of a nonenveloped virus entry intermediate.

Manidipa Banerjee, Jeffrey A Speir, Maggie H Kwan, Rick Huang, Peyman P Aryanpur, Brian Bothner, John E Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  14. Article
  15. Crystal structure of a nematode-infecting virus.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  16. Review
  17. Confessions of an icosahedral virus crystallographer.Microscopy (Oxford, England) · 2013
    Review
  18. Nucleic acid packaging in viruses.Current opinion in structural biology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Manidipa BanerjeeDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Jeffrey A Speir
Maggie H Kwan
Rick Huang
Peyman P Aryanpur
Brian Bothner
John E Johnson
Scripps Research Institute · USMontana State University · US

Funding

High Resolution of Structural Studies of Insect VirusesR37GM034220 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI JOHNSON, JOHN EMIL · 2002 to 2011
$4.7M
NIGMS NIH HHS 4R37-GM34220NIGMS NIH HHS R37 GM034220
6 · The paper itself

Abstract

Divalent metal ions are components of numerous icosahedral virus capsids. Flock House virus (FHV), a small RNA virus of the family Nodaviridae, was utilized as an accessible model system with which to address the effects of metal ions on capsid structure and on the biology of virus-host interactions. Mutations at the calcium-binding sites affected FHV capsid stability and drastically reduced virus infectivity, without altering the overall architecture of the capsid. The mutations also altered the conformation of gamma, a membrane-disrupting, virus-encoded peptide usually sequestered inside the capsid, by increasing its exposure under neutral pH conditions. Our data demonstrate that calcium binding is essential for maintaining a pH-based control on gamma exposure and host membrane disruption, and they reveal a novel rationale for the metal ion requirement during virus entry and infectivity. In the light of the phenotypes displayed by a calcium site mutant of FHV, we suggest that this mutant corresponds to an early entry intermediate formed in the endosomal pathway.

Indexed as

Virus InternalizationAnimalsBinding SitesCalciumCapsid ProteinsCations, DivalentCell LineCrystallography, X-RayDrosophila melanogasterHost-Pathogen InteractionsModels, MolecularMutagenesis, Site-DirectedNodaviridaeProtein Structure, QuaternarySpodopteraViral Plaque AssayCalciumCapsid ProteinsCations, Divalent

Identifiers

PMID20164221
PMCPMC2863772
OpenAlexW2122307747

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.