Evidence map›Paper›PMID 20161724›Full record

ArticlePLoS neglected tropical diseases2010

An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum.

Zhangxun Wang, Xiangyang Xue, Jun Sun, Rong Luo, Xindong Xu, Yanyan Jiang, Qingfeng Zhang, Weiqing Pan

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Identification of aFrontiers in cellular and infection microbiology · 2022
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The small RNA complement of adult Schistosoma haematobium.PLoS neglected tropical diseases · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Advances in the Diagnosis of Human Schistosomiasis.Clinical microbiology reviews · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Zhangxun WangInstitute for Infectious Diseases and Vaccine Development, Tongji University School of Medicine, Shanghai, China.
Xiangyang Xue
Jun Sun
Rong Luo
Xindong Xu
Yanyan Jiang
Qingfeng Zhang
Weiqing Pan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parasitic flatworms of the genus Schistosoma are the causative agents of schistosomiasis, which afflicts more than 200 million people yearly in tropical regions of South America, Asia and Africa. A promising approach to the control of this and many other diseases involves the application of our understanding of small non-coding RNA function to the design of safe and effective means of treatment. In a previous study, we identified five conserved miRNAs from the adult stage of Schistosoma japonicum. Here, we applied Illumina Solexa high-throughput sequencing methods (deep sequencing) to investigate the small RNAs expressed in S. japonicum schistosomulum (3 weeks post-infection). This has allowed us to examine over four million sequence reads including both frequently and infrequently represented members of the RNA population. Thus we have identified 20 conserved miRNA families that have orthologs in well-studied model organisms and 16 miRNA that appear to be specific to Schistosoma. We have also observed minor amounts of heterogeneity in both 3' and 5' terminal positions of some miRNA as well as RNA fragments resulting from the processing of miRNA precursor. An investigation of the genomic arrangement of the 36 identified miRNA revealed that seven were tightly linked in two clusters. We also identified members of the small RNA population whose structure indicates that they are part of an endogenously derived RNA silencing pathway, as evidenced by their extensive complementarities with retrotransposon and retrovirus-related Pol polyprotein from transposon.

Indexed as

AnimalsBase SequenceConserved SequenceGenes, HelminthMicroRNAsModels, MolecularMolecular Sequence DataMultigene FamilyNucleic Acid ConformationPolymorphism, GeneticRNA, HelminthSchistosoma japonicumSequence Analysis, DNAMicroRNAsRNA, Helminth

Identifiers

PMID20161724
PMCPMC2817716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.