Evidence map›Paper›PMID 20159976›Full record

ArticleThe Journal of biological chemistry2010

Transmembrane domain 6 of the human serotonin transporter contributes to an aqueously accessible binding pocket for serotonin and the psychostimulant 3,4-methylene dioxymethamphetamine.

Julie R Field, L Keith Henry, Randy D Blakely

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

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  19. Transgenic elimination of high-affinity antidepressant and cocaine sensitivity in the presynaptic serotonin transporter.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  20. Monoamine transporters: vulnerable and vital doorkeepers.Progress in molecular biology and translational science · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Julie R FieldDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232-8548, USA.
L Keith Henry
Randy D Blakely
University of North Dakota · USVanderbilt University Medical Center · US

Funding

REGULATION OF SEROTONIN TRANSPORTERSR01DA007390 · NIDA · VANDERBILT UNIVERSITY · PI BLAKELY, RANDY D. · 1991 to 2010
$3.9M
Integration of Computational and Biological Analysis of Serotonin TransportersK01DA022378 · NIDA · VANDERBILT UNIVERSITY · PI HENRY, LOREN KEITH · 2007 to 2009
$371k
Structure-Guided Analysis of the Serotonin TransporterF31DA023337 · NIDA · VANDERBILT UNIVERSITY · PI FIELD, JULIE R. · 2007 to 2008
$51k
NIDA NIH HHS DA022378NIDA NIH HHS DA07390NIDA NIH HHS DA23337NIDA NIH HHS F31 DA023337NIDA NIH HHS K01 DA022378NIDA NIH HHS R01 DA007390
6 · The paper itself

Abstract

The plasma membrane serotonin (5-HT) transporter (SERT, SLC6A4) clears 5-HT after release at nerve termini and is targeted by both antidepressant medications and psychostimulants (e.g. MDMA, cocaine). Homology modeling of human SERT (hSERT), based on high resolution structures of the microbial SLC6 family member LeuT(Aa), along with biochemical studies of wild type and mutant transporters, predicts transmembrane (TM) domains 1, 3, 6, and 8 comprise the 5-HT-binding pocket. We utilized the substituted cysteine accessibility method along with surface and site-specific biotinylation to probe TM6 for aqueous accessibility and differential interactions with 5-HT and psychostimulants. Our results are consistent with TM6 being composed of an aqueous-accessible, alpha-helical extracellular domain (TM6a) that is separated by a central, unwound section from a cytoplasmically localized domain (TM6b) with limited aqueous accessibility. The substitution G338C appears to lock hSERT in an outward-facing conformation that, although accessible to aminoethylmethanethiosulfonate-biotin, 5-HT, and citalopram, is incapable of inward 5-HT transport. Transport of 5-HT by G338C can be partially restored by the TM1 mutation Y95F. With regard to methanethiosulfonate (MTS) inactivation of uptake, TM6a Cys mutants demonstrate Na(+)-dependent [2-(trimethylammonium)ethyl]-MTS sensitivity. Studies with the centrally located substitution S336C reveal features of a common binding pocket for 5-HT and 3,4-methylenedioxymethamphetamine (MDMA). Interestingly, the substitution I333C reveals an MDMA-induced conformation not observed with 5-HT. In the context of prior studies on TM1, our findings document shared and unique features of TM6 contributing to hSERT aqueous accessibility, ligand recognition, and conformational dynamics.

Indexed as

Biological TransportCytoplasmHumansKineticsModels, BiologicalMutagenesis, Site-DirectedMutationN-Methyl-3,4-methylenedioxyamphetamineProtein BindingProtein ConformationProtein Structure, TertiarySerotoninSerotonin AgentsSerotonin Plasma Membrane Transport ProteinsWaterN-Methyl-3,4-methylenedioxyamphetamineSerotoninSerotonin AgentsSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, humanWater

Identifiers

PMID20159976
PMCPMC2857005
OpenAlexW1989340741

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.