Evidence map›Paper›PMID 20158906›Full record

ArticleRetrovirology2010

In situ detection of Gag-specific CD8+ cells in the GI tract of SIV infected Rhesus macaques.

Annelie Tjernlund, Jia Zhu, Kerry Laing, Kurt Diem, David McDonald, Julio Vazquez, Jianhong Cao, Claes Ohlen, M Juliana McElrath, Louis J Picker and 1 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Retrovirology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 32 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Cytolytic CD8Science immunology · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Detection of Antigen-Specific T Cells Using In Situ MHC Tetramer Staining.International journal of molecular sciences · 2019
    Review
  11. Article
  12. Chimeric antigen receptor T-cell approaches to HIV cure.Current opinion in HIV and AIDS · 2018
    Review
  13. Mechanisms of CD8European journal of immunology · 2018
    Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Annelie TjernlundVaccine & Infectious Disease Institute, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Jia Zhu
Kerry Laing
Kurt Diem
David McDonald
Julio Vazquez
Jianhong Cao
Claes Ohlen
M Juliana McElrath
Louis J Picker
Lawrence Corey
Fred Hutch Cancer Center · USInfectious Disease Research Institute · USUniversity of Washington · USOregon National Primate Research Center · USScience Applications International Corporation (United States) · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 1985 to 2011
$161.1M
Cytotoxic T-Cell Responses to HSV: HIV-Infected PersonsR37AI042528 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI COREY, LAWRENCE · 2002 to 2011
$3.5M
NCRR NIH HHS RR00166NIAID NIH HHS R37AI042528
6 · The paper itself

Abstract

backgroundSIV and HIV predominantly replicate in lymphoid tissue, but the study of virus specific CD8+ T cells in intact lymphoid tissue is difficult, as traditional in situ tetramer staining requires fresh tissue.

resultsIn this report, we demonstrate a novel technique using Qdot 655-conjugated peptide-MHC multimers to directly visualize SIV specific cells in cryopreserved tissue biopsies from chronically SIVmac239 infected Rhesus macaques. Qdot 655 multimers showed similar sensitivity and specificity to APC-conjugated tetramers by flow cytometry analysis, but yielded ten-fold higher signal intensity when imaged by fluorescence microscopy. Using this technique, we detected CD8+ T cells which recognize an immunodominant epitope (Gag CM9) in the spleen, lymph nodes, ileum and colon. In all these tissues, the Gag CM9 positive cells were mainly located in the extra follicular T cell zone. In the ileum and colon, we found Gag CM9 positive cells concentrated in Peyer's patches and solitary lymphoid follicles, a pattern of localization not previously described.

conclusionsThe use of Qdot multimers provide an anatomic and quantitative evaluation of SIV specific CD8+ T cell responses in SIV pathogenesis, and may prove useful to studies of SIV specific CD8+ T cell responses elicited by vaccines and other immunotherapies in the non-human primate model.

Indexed as

AnimalsCD8-Positive T-LymphocytesFlow CytometryGastrointestinal TractGene Products, gagLymph NodesMacaca mulattaMicroscopy, FluorescencePathology, MolecularPeyer's PatchesSensitivity and SpecificitySimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusSpleenStaining and LabelingGene Products, gag

Identifiers

PMID20158906
PMCPMC2834607
OpenAlexW2010333845

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.