Evidence map›Paper›PMID 20156452›Full record

ArticleJournal of molecular biology2010

Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1.

Parthasarathy Sampathkumar, Sinem A Ozyurt, Stacy A Miller, Kevin T Bain, Marc E Rutter, Tarun Gheyi, Benjamin Abrams, Yingchun Wang, Shane Atwell, John G Luz and 9 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 1 country.

Parthasarathy SampathkumarEli Lilly and Company, Lilly Biotechnology Center, 10300 Campus Point Drive, Suite 200, San Diego, CA 92121, USA. sampathkumarpa@lilly.com
Sinem A Ozyurt
Stacy A Miller
Kevin T Bain
Marc E Rutter
Tarun Gheyi
Benjamin Abrams
Yingchun Wang
Shane Atwell
John G Luz
Devon A Thompson
Stephen R Wasserman
J Spencer Emtage
Eun Chan Park
Christopher Rongo
Yishi Jin
Richard L Klemke
J Michael Sauder
Stephen K Burley
Eli Lilly (United States) · USRutgers, The State University of New Jersey · USUniversity of California, Santa Cruz · USArgonne National Laboratory · USMoores Cancer CenterUniversity of California, San Diego · US

Funding

SUBPROJECT 5U54GM074945 · NIGMS · SGX PHARMACEUTICALS, INC. · PI BURLEY, STEPHEN KEVIN · 2005 to 2009
$46.2M
GABAERGIC NEURON DIFFERENTIATION IN C ELEGANSR01NS035546 · NINDS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI JIN, YISHI · 1996 to 2016
$5.3M
Synapse Formation in the C. elegans Nervous SystemR01NS042023 · NINDS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI RONGO, CHRISTOPHER G · 2002 to 2018
$4.6M
Genetics Analysis of Neuronal Hypoxic Stress ResistanceR01GM101972 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI RONGO, CHRISTOPHER G · 2012 to 2024
$4.1M
GABAergic Neuron Differentiation in C.elegansR37NS035546 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JIN, YISHI · 2017 to 2021
$2.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM101972NIGMS NIH HHS U54 GM074945NINDS NIH HHS NS035546NINDS NIH HHS R01 NS035546NINDS NIH HHS R01 NS042023NINDS NIH HHS R37 NS035546
6 · The paper itself

Abstract

PHR [PAM (protein associated with Myc)-HIW (Highwire)-RPM-1 (regulator of presynaptic morphology 1)] proteins are conserved, large multi-domain E3 ubiquitin ligases with modular architecture. PHR proteins presynaptically control synaptic growth and axon guidance and postsynaptically regulate endocytosis of glutamate receptors. Dysfunction of neuronal ubiquitin-mediated proteasomal degradation is implicated in various neurodegenerative diseases. PHR proteins are characterized by the presence of two PHR domains near the N-terminus, which are essential for proper localization and function. Structures of both the first and second PHR domains of Mus musculus (mouse) Phr1 (MYC binding protein 2, Mycbp2) have been determined, revealing a novel beta sandwich fold composed of 11 antiparallel beta-strands. Conserved loops decorate the apical side of the first PHR domain (MmPHR1), yielding a distinct conserved surface feature. The surface of the second PHR domain (MmPHR2), in contrast, lacks significant conservation. Importantly, the structure of MmPHR1 provides insights into a loss-of-function mutation, Gly1092-->Glu, observed in the Caenorhabditis elegans ortholog RPM-1.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsCrystallography, X-RayGuanine Nucleotide Exchange FactorsMiceModels, MolecularMolecular Sequence DataMutant ProteinsProtein Structure, TertiarySequence AlignmentUbiquitin-Protein LigasesCaenorhabditis elegans ProteinsCarrier ProteinsGuanine Nucleotide Exchange FactorsMutant ProteinsMycbp2 protein, mouseRPM-1 protein, C elegansUbiquitin-Protein Ligases

Identifiers

PMID20156452
PMCPMC2881670
OpenAlexW2086302025

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.