Evidence map›Paper›PMID 20154140›Full record

ArticleMolecular and cellular biology2010

The nematode eukaryotic translation initiation factor 4E/G complex works with a trans-spliced leader stem-loop to enable efficient translation of trimethylguanosine-capped RNAs.

Adam Wallace, Megan E Filbin, Bethany Veo, Craig McFarland, Janusz Stepinski, Marzena Jankowska-Anyszka, Edward Darzynkiewicz, Richard E Davis

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  7. Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Article
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  11. Genome research · 2017
    Article
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  15. Trans-splicing and operons in C. elegans.WormBook : the online review of C. elegans biology · 2012
    Review
  16. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Adam WallaceDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Megan E Filbin
Bethany Veo
Craig McFarland
Janusz Stepinski
Marzena Jankowska-Anyszka
Edward Darzynkiewicz
Richard E Davis
University of Warsaw · PLUniversity of Colorado Denver · US

Funding

IN VIVO ANALYSIS OF SL ADDITION IN ASCARIS EMBRYOSR01AI049558 · NIAID · UNIVERSITY OF COLORADO DENVER · PI DAVIS, RICHARD E. · 2000 to 2015
$4.8M
Howard Hughes Medical Institute 55005604NIAID NIH HHS AI49558NIAID NIH HHS R01 AI049558
6 · The paper itself

Abstract

Eukaryotic mRNA translation begins with recruitment of the 40S ribosome complex to the mRNA 5' end through the eIF4F initiation complex binding to the 5' m(7)G-mRNA cap. Spliced leader (SL) RNA trans splicing adds a trimethylguanosine (TMG) cap and a sequence, the SL, to the 5' end of mRNAs. Efficient translation of TMG-capped mRNAs in nematodes requires the SL sequence. Here we define a core set of nucleotides and a stem-loop within the 22-nucleotide nematode SL that stimulate translation of mRNAs with a TMG cap. The structure and core nucleotides are conserved in other nematode SLs and correspond to regions of SL1 required for early Caenorhabditis elegans development. These SL elements do not facilitate translation of m(7)G-capped RNAs in nematodes or TMG-capped mRNAs in mammalian or plant translation systems. Similar stem-loop structures in phylogenetically diverse SLs are predicted. We show that the nematode eukaryotic translation initiation factor 4E/G (eIF4E/G) complex enables efficient translation of the TMG-SL RNAs in diverse in vitro translation systems. TMG-capped mRNA translation is determined by eIF4E/G interaction with the cap and the SL RNA, although the SL does not increase the affinity of eIF4E/G for capped RNA. These results suggest that the mRNA 5' untranslated region (UTR) can play a positive and novel role in translation initiation through interaction with the eIF4E/G complex in nematodes and raise the issue of whether eIF4E/G-RNA interactions play a role in the translation of other eukaryotic mRNAs.

Indexed as

Nucleic Acid ConformationRNA, MessengerTrans-Splicing5' Untranslated RegionsAnimalsBase SequenceCaenorhabditis elegansCaenorhabditis elegans ProteinsCell-Free SystemEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GGuanosineMolecular Sequence DataProtein BiosynthesisRNA Cap AnalogsRNA Stability5' Untranslated Regions8-methylguanosineCaenorhabditis elegans ProteinsEukaryotic Initiation Factor-4EEukaryotic Initiation Factor-4GGuanosineRNA Cap AnalogsRNA, Messenger

Identifiers

PMID20154140
PMCPMC2849463
OpenAlexW2121696558

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.