Evidence map›Paper›PMID 20154125›Full record

ArticleJournal of bacteriology2010

Analysis of protein expression regulated by the Helicobacter pylori ArsRS two-component signal transduction system.

John T Loh, Shobhana S Gupta, David B Friedman, Andrzej M Krezel, Timothy L Cover

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 40 citations in OpenAlex.

  1. Methylation Dynamics inMicroorganisms · 2026
    Article
  2. Biofilm ofAntibiotics (Basel, Switzerland) · 2023
    Review
  3. Article
  4. Insights into the Orchestration of Gene Transcription Regulators inInternational journal of molecular sciences · 2022
    Review
  5. Review
  6. Two-component regulatory systems inFrontiers in cellular and infection microbiology · 2022
    Review
  7. Article
  8. Article
  9. Virulence of Helicobacter pylori outer membrane proteins: an updated review.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  10. Article
  11. Review
  12. Acid-responsive activity of theProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

John T LohDepartment of Medicine, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Shobhana S Gupta
David B Friedman
Andrzej M Krezel
Timothy L Cover
Bipar · FRVanderbilt University Medical Center · USVA Tennessee Valley Healthcare System · US

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2009 to 2026
$27.5M
Structure-function analysis of H. pylori VacAR01AI039657 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI TIMOTHY L COVER · 1996 to 2026
$8.3M
Analysis of the H. Pylori cag pathogenicity islandR01AI068009 · NIAID · VANDERBILT UNIVERSITY · PI COVER, TIMOTHY L · 2008 to 2012
$1.9M
NCI NIH HHS CA116087NCI NIH HHS P01 CA116087NIAID NIH HHS AI068009NIAID NIH HHS AI39657NIAID NIH HHS R01 AI039657NIAID NIH HHS R01 AI068009NIDDK NIH HHS P30 DK058404
6 · The paper itself

Abstract

Previous studies have shown that the Helicobacter pylori ArsRS two-component signal transduction system contributes to acid-responsive gene expression. To identify additional members of the ArsRS regulon and further investigate the regulatory role of the ArsRS system, we analyzed protein expression in wild-type and arsS null mutant strains. Numerous proteins were differentially expressed in an arsS mutant strain compared to a wild-type strain when the bacteria were cultured at pH 5.0 and also when they were cultured at pH 7.0. Genes encoding 14 of these proteins were directly regulated by the ArsRS system, based on observed binding of ArsR to the relevant promoter regions. The ArsRS-regulated proteins identified in this study contribute to acid resistance (urease and amidase), acetone metabolism (acetone carboxylase), resistance to oxidative stress (thioredoxin reductase), quorum sensing (Pfs), and several other functions. These results provide further definition of the ArsRS regulon and underscore the importance of the ArsRS system in regulating expression of H. pylori proteins during bacterial growth at both neutral pH and acidic pH.

Indexed as

Gene Expression Regulation, BacterialAmidohydrolasesBacterial ProteinsCarboxy-LyasesElectrophoresisElectrophoretic Mobility Shift AssayHelicobacter pyloriHydrogen-Ion ConcentrationMass SpectrometryPromoter Regions, GeneticProtein BindingProteomicsSignal TransductionThioredoxin-Disulfide ReductaseTrans-ActivatorsUreaseacetone carboxylaseamidaseAmidohydrolasesBacterial ProteinsCarboxy-LyasesThioredoxin-Disulfide ReductaseTrans-ActivatorsUrease

Identifiers

PMID20154125
PMCPMC2849440
OpenAlexW2110219117

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.