Evidence map›Paper›PMID 20151179›Full record

ArticleMolecular and cellular biochemistry2010

Mechanism for the regulation of mammalian cGMP phosphodiesterase6. 1: identification of its inhibitory subunit complexes and their roles.

Akio Yamazaki, Vladimir A Bondarenko, Isao Matsuura, Masahiro Tatsumi, Sadamu Kurono, Naoka Komori, Hiroyuki Matsumoto, Fumio Hayashi, Russell K Yamazaki, Jiro Usukura

Abstract read
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In one paragraph

Article in Molecular and cellular biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 3 countries.

Akio YamazakiDepartment of Ophthalmology, Kresge Eye Institute, Wayne State University, 4717 St. Antoine St., Detroit, MI 48201-1423, USA. ayamazak@med.wayne.edu
Vladimir A Bondarenko
Isao Matsuura
Masahiro Tatsumi
Sadamu Kurono
Naoka Komori
Hiroyuki Matsumoto
Fumio Hayashi
Russell K Yamazaki
Jiro Usukura
University of Oklahoma Health Sciences Center · USWayne State University · USKobe University · JPNagoya University · JPNational Health Research Institutes · TWNiigata University · JPTouro University Nevada · US

Funding

Ocular proteomics of retinaR01EY013877 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MATSUMOTO, HIROYUKI · 2002 to 2005
$1.8M
G-PROTEIN-EFFECTOR INTERACTION IN ROD PHOTORECEPTORSR01EY009631 · NEI · WAYNE STATE UNIVERSITY · PI YAMAZAKI, AKIO NONE · 1991 to 2003
$1.1M
RECOVERY OF RETINAL PHOTORECEPTORS TO THE DARK STATER01EY007546 · NEI · WAYNE STATE UNIVERSITY · PI YAMAZAKI, AKIO NONE · 1988 to 1998
–
NEI NIH HHS EY07546NEI NIH HHS EY09631NEI NIH HHS EY13877
6 · The paper itself

Abstract

Cyclic GMP phosphodiesterase (PDE) in bovine rod photoreceptor outer segments (OS) comprises a catalytic subunit complex (Palphabeta) and two inhibitory subunits (Pgamma) and is regulated by the alpha subunit of transducin (Talpha). Here, we show an overall mechanism for PDE regulation by identifying Pgamma complexes in OS homogenates prepared with an isotonic buffer. Before Talpha activation, three Pgamma complexes exist in the soluble fraction. Complex a, a minor complex, contains Palphabeta, Talpha, and a protein named Pdelta. Complex b, Palphabetagammagamma( b ), has a PDE activity similar to that of membranous Palphabetagammagamma, Palphabetagammagamma( M ), and its level, although its large portion is Pdelta-free, is estimated to be 20-30% of the total Palphabetagammagamma. Complex c, (Pgamma.GDP-Talpha) (2) ( c ) , appears to be a dimer of Pgamma.GDP-Talpha. Upon Talpha activation, (1) complex a stays unchanged, (2) Palphabetagammagamma( b ) binds to membranes, (3) the level of (Pgamma.GDP-Talpha) (2) ( c ) is reduced as its GTP-form is produced, (4) complex d, Pgamma.GTP-Talpha( d ), is formed on membranes and its substantial amount is released to the soluble fraction, and (5) membranous Palphabetagammagamma, Palphabetagammagamma( M ) and/or Palphabetagammagamma( b ), becomes Pgamma-depleted. These observations indicate that Pgamma as a complex with GTP-Talpha dissociates from Palphabetagammagamma on membranes and is released to the soluble fraction and that Pgamma-depleted PDE is the GTP-Talpha-activated PDE. After GTP hydrolysis, both (Pgamma.GDP-Talpha) (2) ( c ) and Pgamma.GDP-Talpha( d ), without liberating Pgamma, deactivate Pgamma-depleted PDE. The preferential order to be used for the deactivation is membranous Pgamma.GDP-Talpha( d ), solubilized Pgamma.GDP-Talpha( d ) and (Pgamma.GDP-Talpha) (2) ( c ) . Release of Pgamma.GTP-Talpha complexes to the soluble fraction is relevant to light adaptation.

Indexed as

AnimalsBinding SitesBlotting, WesternCattleCyclic Nucleotide Phosphodiesterases, Type 6Guanosine DiphosphateGuanosine TriphosphateImmunoprecipitationProtein SubunitsRetinaRod Cell Outer SegmentCyclic Nucleotide Phosphodiesterases, Type 6Guanosine DiphosphateGuanosine TriphosphateProtein Subunits

Identifiers

PMID20151179
OpenAlexW2052108275

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.