Evidence map›Paper›PMID 20151104›Full record

ArticleJournal of molecular medicine (Berlin, Germany)2010

Identification of differentially expressed small non-protein-coding RNAs in Staphylococcus aureus displaying both the normal and the small-colony variant phenotype.

Luay F Abu-Qatouseh, Suresh V Chinni, Jochen Seggewiss, Richard A Proctor, Jürgen Brosius, Timofey S Rozhdestvensky, Georg Peters, Christof von Eiff, Karsten Becker

Abstract read
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Article in Journal of molecular medicine (Berlin, Germany), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Article
  2. The small RNA Teg16 repressesbioRxiv : the preprint server for biology · 2026
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  6. International journal of molecular sciences · 2024
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  9. Identification ofVirulence · 2023
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  10. Review
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  12. Sequence Analysis of NovelInternational journal of molecular sciences · 2022
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  13. Thirty Years of sRNA-Mediated Regulation inInternational journal of molecular sciences · 2022
    Review
  14. Review
  15. Review
  16. Impact ofMicroorganisms · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. ClinicalToxins · 2019
    Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Luay F Abu-QatousehUniversity Hospital of Münster, Institute of Medical Microbiology, Domagkstr. 10, 48149, Münster, Germany.
Suresh V Chinni
Jochen Seggewiss
Richard A Proctor
Jürgen Brosius
Timofey S Rozhdestvensky
Georg Peters
Christof von Eiff
Karsten Becker

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emerging interest in RNA research is due to the discovery that bacterial non-protein-coding RNAs (npcRNAs; often referred to as "non-coding RNAs") are central regulatory molecules. While single npcRNAs have been described in Staphylococcus aureus, mostly based on computational-based approaches, experimental data on npcRNAs and their impact on the formation of different phenotypes of S. aureus are missing. Consequently, two specialized cDNA libraries were constructed from total RNA collected from different growth phases of an isogenic clinical strain pair of S. aureus displaying both the normal and the small-colony variant phenotype. Overall, 142 candidates for novel npcRNAs were identified and their expression analyzed by Northern blot assays. Of these, the presence of 18 novel npcRNAs in S. aureus was experimentally confirmed. In fact, growth phase-specific regulation was detected for almost all of the novel npcRNAs, with different npcRNA expression patterns detectable for both phenotypes. Of particular interest, S. aureus phenotype-specific expression of four novel npcRNAs was documented. Thus, the presence of differentially expressed npcRNAs in S. aureus may help to understand the phenotypic variation and its associated pathogenicity.

Indexed as

PhenotypeGene Expression ProfilingGene LibraryMolecular Sequence DataMultigene FamilyOligonucleotide Array Sequence AnalysisRNA, UntranslatedStaphylococcus aureusRNA, Untranslated

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.