Evidence map›Paper›PMID 20150428›Full record

ArticleThe Journal of biological chemistry2010

A protein involved in the assembly of an extracellular calcium storage matrix.

Lilah Glazer, Assaf Shechter, Moshe Tom, Yana Yudkovski, Simy Weil, Eliahu David Aflalo, Ramachandra Reddy Pamuru, Isam Khalaila, Shmuel Bentov, Amir Berman and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 49 citations in OpenAlex.

  1. A diecast mineralization process forms the tough mantis shrimp dactyl club.Proceedings of the National Academy of Sciences of the United States of America · 2019
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  12. In situ molecular NMR picture of bioavailable calcium stabilized as amorphous CaCO₃ biomineral in crayfish gastroliths.Proceedings of the National Academy of Sciences of the United States of America · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Lilah GlazerDepartment of Life Sciences, Ben-Gurion University, P. O. Box 653, Beer-Sheva 84105, Israel.
Assaf Shechter
Moshe Tom
Yana Yudkovski
Simy Weil
Eliahu David Aflalo
Ramachandra Reddy Pamuru
Isam Khalaila
Shmuel Bentov
Amir Berman
Amir Sagi
Ben-Gurion University of the Negev · ILIsrael Oceanographic and Limnological Research · ILYogi Vemana University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gastroliths, the calcium storage organs of crustaceans, consist of chitin-protein-mineral complexes in which the mineral component is stabilized amorphous calcium carbonate. To date, only three proteins, GAP 65, gastrolith matrix protein (GAMP), and orchestin, have been identified in gastroliths. Here, we report a novel protein, GAP 10, isolated from the gastrolith of the crayfish Cherax quadricarinatus and specifically expressed in its gastrolith disc. The encoding gene was cloned by partial sequencing of the protein extracted from the gastrolith matrix. Based on an assembled microarray cDNA chip, GAP 10 transcripts were found to be highly (12-fold) up-regulated in premolt gastrolith disc and significantly down-regulated in the hypodermis at the same molt stage. The deduced protein sequence of GAP 10 lacks chitin-binding domains and does not show homology to known proteins in the GenBank data base. It does, however, have an amino acid composition that has similarity to proteins extracted from invertebrate and ascidian-calcified extracellular matrices. The GAP 10 sequence contains a predicted signal peptide and predicted phosphorylation sites. In addition, the protein is phosphorylated and exhibits calcium-binding ability. Repeated daily injections of GAP 10 double strand RNA to premolt C. quadricarinatus resulted in a prolonged premolt stage and in the development of gastroliths with irregularly rough surfaces. These findings suggest that GAP 10 may be involved in the assembly of the gastrolith chitin-protein-mineral complex, particularly in the deposition of amorphous calcium carbonate.

Indexed as

AnimalsAnimal StructuresAstacoideaBase SequenceCalciumCalcium-Binding ProteinsCloning, MolecularExtracellular MatrixExtracellular Matrix ProteinsGene Expression ProfilingGene Expression RegulationMaleMolecular Sequence DataMoltingOligonucleotide Array Sequence AnalysisCalciumCalcium-Binding ProteinsExtracellular Matrix Proteins

Identifiers

PMID20150428
PMCPMC2857067
OpenAlexW2105579098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.