Evidence map›Paper›PMID 20147292›Full record

ArticleThe Journal of biological chemistry2010

Ligand binding and subtype selectivity of the human A(2A) adenosine receptor: identification and characterization of essential amino acid residues.

Veli-Pekka Jaakola, J Robert Lane, Judy Y Lin, Vsevolod Katritch, Adriaan P Ijzerman, Raymond C Stevens

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 92 citations in OpenAlex.

  1. Journal of integrative bioinformatics · 2022
    Article
  2. Cancer-Associated Mutations of the Adenosine AMolecules (Basel, Switzerland) · 2022
    Article
  3. Frontiers in bioinformatics · 2022
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Ligand-induced conformational changes in a SMALP-encapsulated GPCR.Biochimica et biophysica acta. Biomembranes · 2020
    Article
  9. Article
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  18. Article
  19. Homology models of melatonin receptors: challenges and recent advances.International journal of molecular sciences · 2013
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Veli-Pekka JaakolaDepartment of Molecular Biology, Scripps Research Institute, La Jolla, California 92037, USA.
J Robert Lane
Judy Y Lin
Vsevolod Katritch
Adriaan P Ijzerman
Raymond C Stevens
Centre for Human Drug Research · NLScripps Research Institute · US

Funding

Sub-project 5U54GM074961 · NIGMS · EMERALD BIOSTRUCTURES · PI RUTH, RONALD D. · 2005 to 2009
$19.3M
NIGMS NIH HHS U54 GM074961
6 · The paper itself

Abstract

The crystal structure of the human A(2A) adenosine receptor bound to the A(2A) receptor-specific antagonist, ZM241385, was recently determined at 2.6-A resolution. Surprisingly, the antagonist binds in an extended conformation, perpendicular to the plane of the membrane, and indicates a number of interactions unidentified before in ZM241385 recognition. To further understand the selectivity of ZM241385 for the human A(2A) adenosine receptor, we examined the effect of mutating amino acid residues within the binding cavity likely to have key interactions and that have not been previously examined. Mutation of Phe-168 to Ala abolishes both agonist and antagonist binding as well as receptor activity, whereas mutation of this residue to Trp or Tyr had only moderate effects. The Met-177 --> Ala mutation impeded antagonist but not agonist binding. Finally, the Leu-249 --> Ala mutant showed neither agonist nor antagonist binding affinity. From our results and previously published mutagenesis data, we conclude that conserved residues Phe-168(5.29), Glu-169(5.30), Asn-253(6.55), and Leu-249(6.51) play a central role in coordinating the bicyclic core present in both agonists and antagonists. By combining the analysis of the mutagenesis data with a comparison of the sequences of different adenosine receptor subtypes from different species, we predict that the interactions that determine subtype selectivity reside in the more divergent "upper" region of the binding cavity while the "lower" part of the binding cavity is conserved across adenosine receptor subtypes.

Indexed as

Models, MolecularAdenosine A2 Receptor AntagonistsAmino Acid SubstitutionBinding SitesCell LineHumansLigandsMutagenesisMutation, MissenseProtein BindingReceptor, Adenosine A2ATriazinesTriazolesAdenosine A2 Receptor AntagonistsLigandsReceptor, Adenosine A2ATriazinesTriazolesZM 241385

Identifiers

PMID20147292
PMCPMC2857108
OpenAlexW1969591740

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.