ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010
Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.
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Who cites it
41 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Whole-genome meta-analysis coupled with haplotype analysis reveal new genes and functional haplotypes conferring pre-harvest sprouting in rice.BMC plant biology · 2025Pooled it
- Genotypic Characterization and Evaluation ofCurrent issues in molecular biology · 2026Article
- Modern Japanese rice cultivars often carry a nonautonomous retrotransposon-insertion mutation at the pathogenesis-related 1b protein gene locus causing reduced resistance to Pyricularia oryzae.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Mapping QTLs for PHS resistance and development of a deep learning model to measure PHS rate in japonica rice.The plant genome · 2025Article
- Selection of chromosome segment substitution lines with reduced grain chalkiness without yield penalty in rice.Breeding science · 2025Article
- Impact of rice GENERAL REGULATORY FACTOR14h (GF14h) on low-temperature seed germination and its application to breeding.PLoS genetics · 2024Article
- A mediator of OsbZIP46 deactivation and degradation negatively regulates seed dormancy in rice.Nature communications · 2024Article
- Phenotypic characterization of pre-harvest sprouting resistance mutants generated by the CRISPR/Cas9-geminiviral replicon system in rice.BMB reports · 2024Article
- Development of 12 sets of chromosome segment substitution lines that enhance allele mining in Asian cultivated rice.Breeding science · 2023Article
- Genome-Wide Association Study for Seed Dormancy Using Re-Sequenced Germplasm under Multiple Conditions in Rice.International journal of molecular sciences · 2023Article
- Sequencing and de novo assembly of the Koshihikari genome and identification of the genomic region related to the eating quality of cooked rice.Molecular breeding : new strategies in plant improvement · 2022Article
- Genome-wide association study identifies a gene responsible for temperature-dependent rice germination.Nature communications · 2022Article
- Introgression Lines: Valuable Resources for Functional Genomics Research and Breeding in Rice (Frontiers in plant science · 2022Review
- Seed Dormancy and Pre-Harvest Sprouting in Rice-An Updated Overview.International journal of molecular sciences · 2021Review
- QTL mapping for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing.Molecular genetics and genomics : MGG · 2020Article
- Characterization of a New qLTG3-1 Allele for Low-temperature Germinability in Rice from the Wild Species Oryza rufipogon.Rice (New York, N.Y.) · 2020Article
- The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.Plant biotechnology journal · 2019Article
- Development and use of chromosome segment substitution lines as a genetic resource for crop improvement.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Review
- Two Contrasting Patterns and Underlying Genes for Coadaptation of Seed Dormancy and Flowering Time in Rice.Scientific reports · 2018Article
- Koshihikari: a premium short-grain rice cultivar - its expansion and breeding in Japan.Rice (New York, N.Y.) · 2018Review
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9 authors.
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Abstract
Backcrossed inbred lines (BILs) and a set of reciprocal chromosome segment substitution lines (CSSLs) derived from crosses between japonica rice cultivars Nipponbare and Koshihikari were used to detect quantitative trait loci (QTLs) for pre-harvest sprouting resistance. In the BILs, we detected one QTL on chromosome 3 and one QTL on chromosome 12. The QTL on the short arm of chromosome 3 accounted for 45.0% of the phenotypic variance and the Nipponbare allele of the QTL increased germination percentage by 21.3%. In the CSSLs, we detected seven QTLs, which were located on chromosomes 2, 3 (two), 5, 8 and 11 (two). All Nipponbare alleles of the QTLs were associated with an increased rate of germination. The major QTL for pre-harvest sprouting resistance on the short arm of chromosome 3 was localized to a 474-kbp region in the Nipponbare genome by the SSR markers RM14240 and RM14275 by using 11 substitution lines to replace the different short chromosome segments on chromosome 3. This QTL co-localized with the low-temperature germinability gene qLTG3-1. The level of germinability under low temperature strongly correlated with the level of pre-harvest sprouting resistance in the substitution lines. Sequence analyses revealed a novel functional allele of qLTG3-1 in Nipponbare and a loss-of-function allele in Koshihikari. The allelic difference in qLTG3-1 between Nipponbare and Koshihikari is likely to be associated with differences in both pre-harvest sprouting resistance and low-temperature germinability.
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