Evidence map›Paper›PMID 20145675›Full record

ArticleEuropean journal of human genetics : EJHG2010

The USH2A c.2299delG mutation: dating its common origin in a Southern European population.

Elena Aller, Lise Larrieu, Teresa Jaijo, David Baux, Carmen Espinós, Fernando González-Candelas, Carmen Nájera, Francesc Palau, Mireille Claustres, Anne-Françoise Roux and 1 more

Abstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Trial
  2. Nonsense Mutation inInternational journal of molecular sciences · 2026
    Article
  3. Review
  4. Article
  5. A Comparative Evaluation of the Genetic Variant Spectrum in theInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Article
  8. Molecular vision · 2023
    Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Antisense oligonucleotide-based treatment of retinitis pigmentosa caused by USH2A exon 13 mutations.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article
  15. Usher Syndrome: Genetics of a Human Ciliopathy.International journal of molecular sciences · 2021
    Review
  16. Review
  17. Article
  18. Usher Syndrome in the Inner Ear: Etiologies and Advances in Gene Therapy.International journal of molecular sciences · 2021
    Review
  19. Article
  20. Prevalence and genetic-phenotypic characteristics of patients withThe British journal of ophthalmology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Elena AllerUnidad de Genética, Hospital Universitario La Fe, Valencia, Spain.
Lise Larrieu
Teresa Jaijo
David Baux
Carmen Espinós
Fernando González-Candelas
Carmen Nájera
Francesc Palau
Mireille Claustres
Anne-Françoise Roux
José M Millán

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Usher syndrome type II is the most common form of Usher syndrome. USH2A is the main responsible gene of the three known to be disease causing. It encodes two isoforms of the protein usherin. This protein is part of an interactome that has an essential role in the development and function of inner ear hair cells and photoreceptors. The gene contains 72 exons spanning over a region of 800 kb. Although numerous mutations have been described, the c.2299delG mutation is the most prevalent in several populations. Its ancestral origin was previously suggested after the identification of a common core haplotype restricted to 250 kb in the 5' region that encodes the short usherin isoform. By extending the haplotype analysis over the 800 kb region of the USH2A gene with a total of 14 intragenic single nucleotide polymorphisms, we have been able to define 10 different c.2299delG haplotypes, showing high variability but preserving the previously described core haplotype. An exhaustive c.2299delG/control haplotype study suggests that the major source of variability in the USH2A gene is recombination. Furthermore, we have evidenced twice the amount of recombination hotspots located in the 500 kb region that covers the 3' end of the gene, explaining the higher variability observed in this region when compared with the 250 kb of the 5' region. Our data confirm the common ancestral origin of the c.2299delG mutation.

Indexed as

PhylogenyAllelesExtracellular Matrix ProteinsHaplotypesHumansLinkage DisequilibriumMutationPolymorphism, Single NucleotideUsher SyndromesWhite PeopleExtracellular Matrix ProteinsUSH2A protein, human

Identifiers

PMID20145675
PMCPMC2987359

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.