Evidence map›Paper›PMID 20145076›Full record

ArticleAntimicrobial agents and chemotherapy2010

Crystal structure of the narrow-spectrum OXA-46 class D beta-lactamase: relationship between active-site lysine carbamylation and inhibition by polycarboxylates.

Jean-Denis Docquier, Manuela Benvenuti, Vito Calderone, Francesco Giuliani, Dimos Kapetis, Filomena De Luca, Gian Maria Rossolini, Stefano Mangani

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Article in Antimicrobial agents and chemotherapy, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

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0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Review
  2. Article
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  7. Article
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  12. Acquired Class D β-Lactamases.Antibiotics (Basel, Switzerland) · 2014
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
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  19. Article
  20. Bacterial cell-wall recycling.Annals of the New York Academy of Sciences · 2013
    Review
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors.

Jean-Denis DocquierDipartimento di Biologia Molecolare, Università di Siena, Siena, Italy.
Manuela Benvenuti
Vito Calderone
Francesco Giuliani
Dimos Kapetis
Filomena De Luca
Gian Maria Rossolini
Stefano Mangani

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Class D beta-lactamases represent a heterogeneous group of active-site serine beta-lactamases that show an extraordinary panel of functional features and substrate profiles, thus representing relevant models for biochemical and structural studies. OXA-46 is a narrow-spectrum enzyme belonging to the OXA-2 subgroup which was found in a Pseudomonas aeruginosa clinical isolate from northern Italy. In this work, we obtained the three-dimensional structure of OXA-46, which shows the overall fold of active serine beta-lactamases and a dimeric quaternary structure. Significant differences with currently available structures of class D beta-lactamases were found in the loops located close to the active site, which differ in length and conformation. Interestingly, the three subunits present in the asymmetric unit showed some structural heterogeneity, only one of which presented a carbamylated lysine recognized as an important functional feature of class D enzymes. The carbamylation state of residue Lys75 appeared to be associated with different shapes and dimensions of the active site. Moreover, a tartrate molecule from the crystallization buffer was found in the active site of the noncarbamylated subunits, which interacts with catalytically relevant residues. The OXA-46 crystal asymmetric units thus interestingly present the structures of the free carbamylated active site and of the ligand-bound uncarbamylated active site, offering the structural basis for investigating the potential of new scaffolds of beta-lactamase inhibitors.

Indexed as

Amino Acid SequenceAnionsbeta-Lactamasesbeta-Lactam ResistanceCarboxylic AcidsCatalytic DomainConserved SequenceCrystallography, X-RayLysineMolecular Sequence DataOxalatesProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiaryPseudomonas aeruginosaStructure-Activity RelationshipAnionsbeta-lactamase OXA-46, Pseudomonas aeruginosabeta-LactamasesCarboxylic AcidsLysineOxalatestartaric acidTartrates

Identifiers

PMID20145076
PMCPMC2863608

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.