Evidence map›Paper›PMID 20144196›Full record

ArticleBMC microbiology2010

Transcriptional profiling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum.

Nalu T A Peres, Pablo R Sanches, Juliana P Falcão, Henrique C S Silveira, Fernanda G Paião, Fernanda C A Maranhão, Diana E Gras, Fernando Segato, Rodrigo A Cazzaniga, Mendelson Mazucato and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Terbinafine Resistance inAntibiotics (Basel, Switzerland) · 2025
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  8. Relevance of Nutrient-Sensing in the Pathogenesis ofFrontiers in fungal biology · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Saline stress affects the pH-dependent regulation of the transcription factor PacC in the dermatophyte Trichophyton interdigitale.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Photodynamic therapy as an antifungal treatment.Experimental and therapeutic medicine · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Nalu T A PeresDepartamento de Genética, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil.
Pablo R Sanches
Juliana P Falcão
Henrique C S Silveira
Fernanda G Paião
Fernanda C A Maranhão
Diana E Gras
Fernando Segato
Rodrigo A Cazzaniga
Mendelson Mazucato
Jeny R Cursino-Santos
Roseli Aquino-Ferreira
Antonio Rossi
Nilce M Martinez-Rossi
Universidade de São Paulo · BRUniversidade de Ribeirão Preto · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCutaneous mycoses are common human infections among healthy and immunocompromised hosts, and the anthropophilic fungus Trichophyton rubrum is the most prevalent microorganism isolated from such clinical cases worldwide. The aim of this study was to determine the transcriptional profile of T. rubrum exposed to various stimuli in order to obtain insights into the responses of this pathogen to different environmental challenges. Therefore, we generated an expressed sequence tag (EST) collection by constructing one cDNA library and nine suppression subtractive hybridization libraries.

resultsThe 1388 unigenes identified in this study were functionally classified based on the Munich Information Center for Protein Sequences (MIPS) categories. The identified proteins were involved in transcriptional regulation, cellular defense and stress, protein degradation, signaling, transport, and secretion, among other functions. Analysis of these unigenes revealed 575 T. rubrum sequences that had not been previously deposited in public databases.

conclusionIn this study, we identified novel T. rubrum genes that will be useful for ORF prediction in genome sequencing and facilitating functional genome analysis. Annotation of these expressed genes revealed metabolic adaptations of T. rubrum to carbon sources, ambient pH shifts, and various antifungal drugs used in medical practice. Furthermore, challenging T. rubrum with cytotoxic drugs and ambient pH shifts extended our understanding of the molecular events possibly involved in the infectious process and resistance to antifungal drugs.

Indexed as

Gene Expression Regulation, FungalGenes, FungalAntifungal AgentsBlotting, NorthernCarbonExpressed Sequence TagsGene Expression ProfilingHumansHydrogen-Ion ConcentrationReproducibility of ResultsRNA, MessengerTrichophytonVirulence FactorsAntifungal AgentsCarbonRNA, MessengerVirulence Factors

Identifiers

PMID20144196
PMCPMC2831883
OpenAlexW2010543755

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.