Evidence map›Paper›PMID 20143226›Full record

ArticleJournal of molecular evolution2010

Evolution of Conus peptide genes: duplication and positive selection in the A-superfamily.

Nicolas Puillandre, Maren Watkins, Baldomero M Olivera

Abstract read
In one paragraph

Article in Journal of molecular evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

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  19. Rapid expansion of the protein disulfide isomerase gene family facilitates the folding of venom peptides.Proceedings of the National Academy of Sciences of the United States of America · 2016
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nicolas PuillandreDepartment of Biology, University of Utah, Salt Lake City, UT 84112, USA. puillandre@biology.utah.edu
Maren Watkins
Baldomero M Olivera

Funding

Venoms, Biological Resources, Molecular BiologyP01GM048677 · NIGMS · UNIVERSITY OF UTAH · PI BANDYOPADHYAY, PRADIP K · 1993 to 2018
$32.2M
SCH: Novel and Interpretable Statistical Learning for Brain Images in AD/ADRDsR01AG085616 · NIA · GEORGE MASON UNIVERSITY · PI XIAO SONG, GuanNan Wang · 2023 to 2026
$1.1M
Joint Modeling of Longitudinal Physical Activity and Diet Data and SurvivalR21CA239168 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI WANG, CHING-YUN · 2020 to 2021
$464k
A novel approach to pinpoint predisposed recombination regions in HIV for a global profile of HIV recombinants' occurrence and evolutionR21AI176947 · NIAID · UNIVERSITY OF GEORGIA · PI HUANG, HANWEN, SONG, XIAO · 2023 to 2024
$386k
NCI NIH HHS R21 CA239168NIAID NIH HHS R21 AI176947NIA NIH HHS R01 AG085616NIGMS NIH HHS GM48677NIGMS NIH HHS P01 GM048677
6 · The paper itself

Abstract

A remarkable diversity of venom peptides is expressed in the genus Conus (known as "conotoxins" or "conopeptides"). Between 50 and 200 different venom peptides can be found in a single Conus species, each having its own complement of peptides. Conopeptides are encoded by a few gene superfamilies; here we analyze the evolution of the A-superfamily in a fish-hunting species clade, Pionoconus. More than 90 conopeptide sequences from 11 different Conus species were used to build a phylogenetic tree. Comparison with a species tree based on standard genes reveals multiple gene duplication events, some of which took place before the Pionoconus radiation. By analysing several A-conopeptides from other Conus species recorded in GenBank, we date the major duplication events after the divergence between fish-hunting and non-fish-hunting species. Furthermore, likelihood approaches revealed strong positive selection; the magnitude depends on which A-conopeptide lineage and amino-acid locus is analyzed. The four major A-conopeptide clades defined are consistent with the current division of the superfamily into families and subfamilies based on the Cys pattern. The function of three of these clades (the κA-family, the α4/7-subfamily, and α3/5-subfamily) has previously been characterized. The function of the remaining clade, corresponding to the α4/4-subfamily, has not been elucidated. This subfamily is also found in several other fish-hunting species clades within Conus. The analysis revealed a surprisingly diverse origin of α4/4 conopeptides from a single species, Conus bullatus. This phylogenetic approach that defines different genetic lineages of Conus venom peptides provides a guidepost for identifying conopeptides with potentially novel functions.

Indexed as

Evolution, MolecularGene DuplicationSelection, GeneticAmino Acid SequenceAnimalsBase SequenceBayes TheoremConotoxinsConus SnailDatabases, GeneticMolecular Sequence DataPhylogenySequence AlignmentConotoxins

Identifiers

PMID20143226
PMCPMC2943986

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.