Evidence map›Paper›PMID 20142038›Full record

ArticleChemistry & biology2010

Biosynthesis of rhizocticins, antifungal phosphonate oligopeptides produced by Bacillus subtilis ATCC6633.

Svetlana A Borisova, Benjamin T Circello, Jun Kai Zhang, Wilfred A van der Donk, William W Metcalf

Abstract read
In one paragraph

Article in Chemistry & biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Secondary Metabolites ofPlants (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Article
  7. Biosynthesis ofACS chemical biology · 2024
    Article
  8. Article
  9. Article
  10. The genome ofFrontiers in microbiology · 2023
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Draft genome sequence ofCurrent research in microbial sciences · 2022
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Svetlana A BorisovaInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Benjamin T Circello
Jun Kai Zhang
Wilfred A van der Donk
William W Metcalf

Funding

Structural Elucidation and Biosynthesis P01GM077596 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI METCALF, WILLIAM W · 2007 to 2016
$15.3M
NIGMS NIH HHS P01 GM 077596NIGMS NIH HHS P01 GM077596
6 · The paper itself

Abstract

Rhizocticins are phosphonate oligopeptide antibiotics containing the C-terminal nonproteinogenic amino acid (Z)-l-2-amino-5-phosphono-3-pentenoic acid (APPA). Here we report the identification and characterization of the rhizocticin biosynthetic gene cluster (rhi) in Bacillus subtilis ATCC6633. Rhizocticin B was heterologously produced in the nonproducer strain Bacillus subtilis 168. A biosynthetic pathway is proposed on the basis of bioinformatics analysis of the rhi genes. One of the steps during the biosynthesis of APPA is an unusual aldol reaction between phosphonoacetaldehyde and oxaloacetate catalyzed by an aldolase homolog RhiG. Recombinant RhiG was prepared, and the product of an in vitro enzymatic conversion was characterized. Access to this intermediate allows for biochemical characterization of subsequent steps in the pathway.

Indexed as

Multigene FamilyAmino Acid SequenceAntifungal AgentsBacillus subtilisBacterial ProteinsComputational BiologyMolecular Sequence DataOligopeptidesOrganophosphonatesOrganophosphorus CompoundsPhosphotransferases (Phosphomutases)Antifungal AgentsBacterial ProteinsOligopeptidesOrganophosphonatesOrganophosphorus Compoundsphosphoenolpyruvate mutasePhosphotransferases (Phosphomutases)rhizocticin B

Identifiers

PMID20142038
PMCPMC2819989

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.