Evidence map›Paper›PMID 20140455›Full record

ArticleMolecular genetics and genomics : MGG2010

Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice.

Eiji Yamamoto, Tomonori Takashi, Yoichi Morinaka, Shaoyang Lin, Jianzhong Wu, Takashi Matsumoto, Hidemi Kitano, Makoto Matsuoka, Motoyuki Ashikari

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In one paragraph

Article in Molecular genetics and genomics : MGG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 124 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Phenotypic characterization and gene mapping of hybrid necrosis in Triticum durum-Haynaldia villosa amphiploids.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  5. Article
  6. Embryo Rescue in Plant Breeding.Plants (Basel, Switzerland) · 2023
    Review
  7. Article
  8. The hybrid lethality of interspecific FMolecular breeding : new strategies in plant improvement · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. TheBreeding science · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Eiji YamamotoBioscience and Biotechnology Center, Nagoya University, Nagoya, 464-8601, Japan.
Tomonori Takashi
Yoichi Morinaka
Shaoyang Lin
Jianzhong Wu
Takashi Matsumoto
Hidemi Kitano
Makoto Matsuoka
Motoyuki Ashikari
Nagoya University · JPInstitute of Agrobiological Sciences · JPKazusa DNA Research Institute · JPHonda (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reproductive isolation plays an important role in speciation as it restricts gene flow and accelerates genetic divergence between formerly interbreeding population. In rice, hybrid breakdown is a common reproductive isolation observed in both intra and inter-specific crosses. It is a type of post-zygotic reproductive isolation in which sterility and weakness are manifested in the F(2) and later generations. In this study, the physiological and molecular basis of hybrid breakdown caused by two recessive genes, hbd2 and hbd3, in a cross between japonica variety, Koshihikari, and indica variety, Habataki, were investigated. Fine mapping of hbd2 resulted in the identification of the causal gene as casein kinase I (CKI1). Further analysis revealed that hbd2-CKI1 allele gains its deleterious function that causes the weakness phenotype by a change of one amino acid. As for the other gene, hbd3 was mapped to the NBS-LRR gene cluster region. It is the most common class of R-gene that triggers the immune signal in response to pathogen attack. Expression analysis of pathogen response marker genes suggested that weakness phenotype in this hybrid breakdown can be attributed to an autoimmune response. So far, this is the first evidence linking autoimmune response to post-zygotic isolation in rice. This finding provides a new insight in understanding the molecular and evolutionary mechanisms establishing post-zygotic isolation in plants.

Indexed as

AutoimmunityGene DeletionGene Expression Regulation, PlantGenetic MarkersMultigene FamilyMutationOryzaPlant ProteinsZygoteGenetic MarkersPlant Proteins

Identifiers

PMID20140455
OpenAlexW1981329998

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.