Evidence map›Paper›PMID 20139420›Full record

ArticleNucleic acids research2010

Structure and DNA binding activity of the mouse condensin hinge domain highlight common and diverse features of SMC proteins.

Julia J Griese, Gregor Witte, Karl-Peter Hopfner

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 96 citations in OpenAlex.

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  20. A folded conformation of MukBEF and cohesin.Nature structural & molecular biology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Julia J GrieseDepartment of Biochemistry, Gene Center, Center for Integrated Protein Sciences and Munich Center for Advanced Photonics, Ludwig-Maximilians University Munich, Feodor-Lynen-Str 25, D-81377 Munich, Germany.
Gregor Witte
Karl-Peter Hopfner
Ludwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural Maintenance of Chromosomes (SMC) proteins are vital for a wide range of processes including chromosome structure and dynamics, gene regulation and DNA repair. Eukaryotes have three SMC complexes, consisting of heterodimeric pairs of six different SMC proteins along with several specific regulatory subunits. In addition to their other functions, all three SMC complexes play distinct roles in DNA repair. Cohesin (SMC1-SMC3) is involved in DNA double-strand break repair, condensin (SMC2-SMC4) participates in single-strand break (SSB) repair, and the SMC5-SMC6 complex functions in various DNA repair pathways. SMC proteins consist of N- and C-terminal domains that fold back onto each other to create an ATPase 'head' domain, connected to a central 'hinge' domain via long coiled-coils. The hinge domain mediates dimerization of SMC proteins and binds DNA, but it is not clear to what purpose this activity serves. We studied the structure and function of the condensin hinge domain from mouse. While the SMC hinge domain structure is largely conserved from prokaryotes to eukaryotes, its function seems to have diversified throughout the course of evolution. The condensin hinge domain preferentially binds single-stranded DNA. We propose that this activity plays a role in the SSB repair function of the condensin complex.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceAnimalsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCrystallizationDimerizationDNA-Binding ProteinsDNA, Single-StrandedMiceModels, MolecularMolecular Sequence DataMultiprotein ComplexesProtein Structure, TertiaryScattering, Small AngleX-Ray DiffractionAdenosine TriphosphatasesCell Cycle ProteinsChromosomal Proteins, Non-Histonecondensin complexesDNA-Binding ProteinsDNA, Single-StrandedMultiprotein ComplexesSMC2 protein, mouseSMC4 protein, mouse

Identifiers

PMID20139420
PMCPMC2879519
OpenAlexW2063221444

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.