Evidence map›Paper›PMID 20139278›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2010

Public TCR use by herpes simplex virus-2-specific human CD8 CTLs.

Lichun Dong, Penny Li, Tjitske Oenema, Christopher L McClurkan, David M Koelle

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Tissue-Resident-Memory CD8Frontiers in immunology · 2021
    Article
  10. Article
  11. CD8Nature communications · 2019
    Article
  12. Article
  13. Article
  14. T Cell Receptor Profiling in Type 1 Diabetes.Current diabetes reports · 2017
    Review
  15. Article
  16. Article
  17. Alloimmune T cells in transplantation.The Journal of clinical investigation · 2017
    Review
  18. Extensive CD4 and CD8 T Cell Cross-Reactivity between Alphaherpesviruses.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Article
  19. Donor Unrestricted T Cells: A Shared Human T Cell Response.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Lichun DongDepartment of Medicine, University of Washington, Seattle, WA 98102, USA.
Penny Li
Tjitske Oenema
Christopher L McClurkan
David M Koelle
Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAUniversity of Groningen · NL

Funding

THE PERINATAL COMPLICATIONS OF ASYMPTOMATIC GENITAL HERPES SIMPLEX VIRUSP01AI030731 · NIAID · UNIVERSITY OF WASHINGTON · PI JOHNSTON, CHRISTINE MICHELLE · 1991 to 2017
$34.3M
Immune Correlates of HSV-2 Disease SeverityR01AI050132 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2003 to 2007
$1.3M
Immune Correlates of HSV-2 Disease SeverityR21AI050132 · NIAID · UNIVERSITY OF WASHINGTON · PI KOELLE, DAVID M · 2001 to 2001
$260k
NIAID NIH HHS AI30731NIAID NIH HHS AI50132NIAID NIH HHS P01 AI030731NIAID NIH HHS R01 AI050132NIAID NIH HHS R21 AI050132
6 · The paper itself

Abstract

Recombination of germline TCR alpha and beta genes generates polypeptide receptors for MHC peptide. Ag exposure during long-term herpes simplex infections may shape the T cell repertoire over time. We investigated the CD8 T cell response to HSV-2 in chronically infected individuals by sequencing the hypervariable regions encoding TCR alpha and beta polypeptides from T cell clones recognizing virion protein 22 aa 49-57, an immunodominant epitope. The most commonly detected TCRBV gene segment, found in four of five subjects and in 12 of 50 independently derived T cell clones, was TCRBV12-4. Nineteen to seventy-two percent of tetramer-binding cells in PBMCs were stained ex vivo with a TCRBV12 mAb. Three alpha-chain and three beta-chain public TCR sequences were shared between individuals. Public heterodimers were also detected. Promiscuous pairing of a specific TCRVA1-1 sequence with several different TCRB polypeptides was observed, implying a dominant structural role for the TCRA chain for these clonotypes. Functional avidity for cytotoxicity and IFN-gamma release was relatively invariant, except for one subject with both high avidity and unique TCR sequences and lower HSV-2 shedding. These data indicate that the CD8 response to a dominant alpha-herpesvirus epitope converges on preferred TCR sequences with relatively constant functional avidity.

Indexed as

Amino Acid SequenceAntigen-Presenting CellsCD8-Positive T-LymphocytesCell Line, TransformedClone CellsCytotoxicity Tests, ImmunologicEpitopes, T-LymphocyteGenes, T-Cell Receptor alphaGenes, T-Cell Receptor betaHerpesvirus 2, HumanHLA-B7 AntigenHLA-B AntigensHumansImmunoglobulin Variable RegionInterferon-gammaMolecular Sequence DataEpitopes, T-LymphocyteHLA-B*07:02 antigenHLA-B7 AntigenHLA-B AntigensImmunoglobulin Variable RegionInterferon-gamma

Identifiers

PMID20139278
PMCPMC2863070
OpenAlexW1676791768

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.