Evidence map›Paper›PMID 20133735›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis.

Blair R G Gordon, Yifei Li, Linru Wang, Anna Sintsova, Harm van Bakel, Songhai Tian, William Wiley Navarre, Bin Xia, Jun Liu

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 130 papers.

0numbers the graph read from it
0cells of the map it votes in
130citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

130 citing papers in PubMed, 227 citations in OpenAlex.

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  10. Loss of the ESX-5 secretion locus inProceedings of the National Academy of Sciences of the United States of America · 2025
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70 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Blair R G GordonDepartment of Molecular Genetics, University of Toronto, Toronto, ON M5S 1A8, Canada.
Yifei Li
Linru Wang
Anna Sintsova
Harm van Bakel
Songhai Tian
William Wiley Navarre
Bin Xia
Jun Liu
University of Toronto · CAPeking University · CN

Funding

Canadian Institutes of Health Research MOP-15107Canadian Institutes of Health Research MOP-86683
6 · The paper itself

Abstract

Bacterial nucleoid-associated proteins play important roles in chromosome organization and global gene regulation. We find that Lsr2 of Mycobacterium tuberculosis is a unique nucleoid-associated protein that binds AT-rich regions of the genome, including genomic islands acquired by horizontal gene transfer and regions encoding major virulence factors, such as the ESX secretion systems, the lipid virulence factors PDIM and PGL, and the PE/PPE families of antigenic proteins. Comparison of genome-wide binding data with expression data indicates that Lsr2 binding results in transcriptional repression. Domain-swapping experiments demonstrate that Lsr2 has an N-terminal dimerization domain and a C-terminal DNA-binding domain. Nuclear magnetic resonance analysis of the DNA-binding domain of Lsr2 and its interaction with DNA reveals a unique structure and a unique mechanism that enables Lsr2 to discriminately target AT-rich sequences through interactions with the minor groove of DNA. Taken together, we provide evidence that mycobacteria have employed a structurally distinct molecule with an apparently different DNA recognition mechanism to achieve a function similar to the Enterobacteriaceae H-NS, likely coordinating global gene regulation and virulence in this group of medically important bacteria.

Indexed as

AT Rich SequenceDNA, BacterialDNA-Binding ProteinsGenes, BacterialModels, MolecularMycobacterium tuberculosisProtein BindingProtein MultimerizationProtein Structure, SecondaryProtein Structure, TertiarySolutionsVirulenceDNA, BacterialDNA-Binding ProteinsLsr2 protein, Mycobacterium tuberculosisSolutions

Identifiers

PMID20133735
PMCPMC2841939
OpenAlexW2017516011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.