Evidence map›Paper›PMID 20133580›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Genome-wide siRNA screen identifies SMCX, EP400, and Brd4 as E2-dependent regulators of human papillomavirus oncogene expression.

Jennifer A Smith, Elizabeth A White, Mathew E Sowa, Maria L C Powell, Matthias Ottinger, J Wade Harper, Peter M Howley

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 153 citations in OpenAlex.

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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jennifer A SmithDepartment of Pathology, Harvard Medical School, Boston, MA 02115, USA.
Elizabeth A White
Mathew E Sowa
Maria L C Powell
Matthias Ottinger
J Wade Harper
Peter M Howley
Harvard University · US

Funding

VIRAL ONCOPROTEIN PERTURBATION OF RB/E2F PATHWAYP01CA050661 · NCI · DANA-FARBER CANCER INSTITUTE · PI LIVINGSTON, DAVID MORSE · 1989 to 2013
$35.8M
Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
Tumor Cell Biology Training ProgramT32CA009361 · NCI · DANA-FARBER CANCER INSTITUTE · PI GRAY, NATHANAEL SCHIANDER · 1985 to 2015
$8.9M
SYSTEMATIC ANALYSIS OF THE DUB PROTEOMER01GM054137 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI HARPER, JEFFREY W · 1996 to 2012
$4.1M
Papillomavirus E2 Functions: Cellular Regulation and EffectorsR01CA116720 · NCI · HARVARD MEDICAL SCHOOL · PI HOWLEY, PETER M · 2006 to 2015
$2.8M
Analysis of Cellular Events that Allow Papillomavirus ReplicationF32AI080075 · NIAID · HARVARD MEDICAL SCHOOL · PI WHITE, ELIZABETH A · 2008 to 2010
$149k
NCI NIH HHS P01 CA050661NCI NIH HHS P01CA050661NCI NIH HHS R01 CA116720NCI NIH HHS R01CA116720NCI NIH HHS T32 CA009361NCI NIH HHS T32CA009361NIAID NIH HHS F32 AI080075NIAID NIH HHS F32AI080075NIA NIH HHS AG011085NIA NIH HHS R01 AG011085NIGMS NIH HHS GM054137NIGMS NIH HHS R01 GM054137
6 · The paper itself

Abstract

An essential step in the pathogenesis of human papillomavirus (HPV)-associated cancers is the dysregulated expression of the viral oncogenes. The papillomavirus E2 protein can silence the long control region (LCR) promoter that controls viral E6 and E7 oncogene expression. The mechanisms by which E2 represses oncogene expression and the cellular factors through which E2 mediates this silencing are largely unknown. We conducted an unbiased, genome-wide siRNA screen and series of secondary screens that identified 96 cellular genes that contribute to the repression of the HPV LCR. In addition to confirming a role for the E2-binding bromodomain protein Brd4 in E2-mediated silencing, we identified a number of genes that have not previously been implicated in E2 repression, including the demethylase JARID1C/SMCX as well as EP400, a component of the NuA4/TIP60 histone acetyltransferase complex. Each of these genes contributes independently and additively to E2-mediated silencing, indicating that E2 functions through several distinct cellular complexes to repress E6 and E7 expression.

Indexed as

Gene Expression Regulation, ViralBromodomain Containing ProteinsCell Cycle ProteinsCell Line, TumorDNA-Binding ProteinsDNA HelicasesFemaleGene SilencingGenome-Wide Association StudyHeLa CellsHistone DemethylasesHuman papillomavirus 18HumansNuclear ProteinsOncogene Proteins, ViralOxidoreductases, N-DemethylatingBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsDNA-Binding ProteinsDNA HelicasesE2 protein, Bovine papillomavirusE2 protein, Human papillomavirus type 16E6 protein, Human papillomavirus type 18E7 protein, Human papillomavirus type 18EP400 protein, humanHistone DemethylasesKDM5C protein, humanNuclear ProteinsOncogene Proteins, ViralOxidoreductases, N-DemethylatingRNA, Small InterferingTranscription FactorsViral Proteins

Identifiers

PMID20133580
PMCPMC2840515
OpenAlexW2009959680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.