Evidence map›Paper›PMID 20132829›Full record

ArticleJournal of molecular biology2010

Crystal structures of trypanosomal histidyl-tRNA synthetase illuminate differences between eukaryotic and prokaryotic homologs.

Ethan A Merritt, Tracy L Arakaki, J Robert Gillespie, Eric T Larson, Angela Kelley, Natascha Mueller, Alberto J Napuli, Jessica Kim, Li Zhang, Christophe L M J Verlinde and 5 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

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  16. Emergence and evolution.Topics in current chemistry · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Ethan A MerrittDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA. merritt@u.washington.edu <merritt@u.washington.edu>
Tracy L Arakaki
J Robert Gillespie
Eric T Larson
Angela Kelley
Natascha Mueller
Alberto J Napuli
Jessica Kim
Li Zhang
Christophe L M J Verlinde
Erkang Fan
Frank Zucker
Frederick S Buckner
Wesley C van Voorhis
Wim G J Hol
University of Washington · USMerritt College · US

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIAID NIH HHS R01 AI084004
6 · The paper itself

Abstract

Crystal structures of histidyl-tRNA synthetase (HisRS) from the eukaryotic parasites Trypanosoma brucei and Trypanosoma cruzi provide a first structural view of a eukaryotic form of this enzyme and reveal differences from bacterial homologs. HisRSs in general contain an extra domain inserted between conserved motifs 2 and 3 of the Class II aminoacyl-tRNA synthetase catalytic core. The current structures show that the three-dimensional topology of this domain is very different in bacterial and archaeal/eukaryotic forms of the enzyme. Comparison of apo and histidine-bound trypanosomal structures indicates substantial active-site rearrangement upon histidine binding but relatively little subsequent rearrangement after reaction of histidine with ATP to form the enzyme's first reaction product, histidyladenylate. The specific residues involved in forming the binding pocket for the adenine moiety differ substantially both from the previously characterized binding site in bacterial structures and from the homologous residues in human HisRSs. The essentiality of the single HisRS gene in T. brucei is shown by a severe depression of parasite growth rate that results from even partial suppression of expression by RNA interference.

Indexed as

Amino Acid SequenceAnimalsCatalytic DomainCrystallography, X-RayGene Knockdown TechniquesGenes, EssentialHistidine-tRNA LigaseModels, MolecularMolecular Sequence DataProtein ConformationProtein Structure, TertiaryRNA InterferenceSequence AlignmentTrypanosoma brucei bruceiTrypanosoma cruziHistidine-tRNA Ligase

Identifiers

PMID20132829
PMCPMC2834879
OpenAlexW2098440430

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.