Evidence map›Paper›PMID 20132824›Full record

ArticleJournal of molecular biology2010

Structure of the MADS-box/MEF2 domain of MEF2A bound to DNA and its implication for myocardin recruitment.

Yongqing Wu, Raja Dey, Aidong Han, Nimanthi Jayathilaka, Michael Philips, Jun Ye, Lin Chen

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Effect of BovineGenes · 2023
    Article
  9. Article
  10. Evolutionary divergence of motifs in B-class MADS-box proteins of seed plants.Journal of biological research (Thessalonike, Greece) · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Structural Basis for Plant MADS Transcription Factor Oligomerization.Computational and structural biotechnology journal · 2019
    Review
  16. Recursive Motif Analyses Identify Brain Epigenetic Transcription Regulatory Modules.Computational and structural biotechnology journal · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yongqing WuDivision of Molecular and Computational Biology, Departments of Biological Sciences and Chemistry, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, RRI 204c, 1050 Childs Way, Los Angeles, CA 90089, USA.
Raja Dey
Aidong Han
Nimanthi Jayathilaka
Michael Philips
Jun Ye
Lin Chen
University of Southern California · US

Funding

Structure and Function of the MEF2 PathwayR01HL076334 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, LIN · 2005 to 2009
$1.3M
Mechanism-based small molecule epigenetic modulators: Targeting specific HDACsRC1DA028790 · NIDA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHEN, LIN, PETASIS, NICOS A · 2009 to 2010
$1.0M
NHLBI NIH HHS R01 HL076334NIDA NIH HHS RC1 DA028790
6 · The paper itself

Abstract

Myocyte enhancer factor 2 (MEF2) regulates specific gene expression in diverse developmental programs and adaptive responses. MEF2 recognizes DNA and interacts with transcription cofactors through a highly conserved N-terminal domain referred to as the MADS-box/MEF2 domain. Here we present the crystal structure of the MADS-box/MEF2 domain of MEF2A bound to DNA. In contrast to previous structural studies showing that the MEF2 domain of MEF2A is partially unstructured, the present study reveals that the MEF2 domain participates with the MADS-box in both dimerization and DNA binding as a single domain. The sequence divergence at and immediately following the C-terminal end of the MEF2 domain may allow different MEF2 dimers to recognize different DNA sequences in the flanking regions. The current structure also suggests that the ligand-binding pocket previously observed in the Cabin1-MEF2B-DNA complex and the HDAC9 (histone deacetylase 9)-MEF2B-DNA complex is not induced by cofactor binding but rather preformed by intrinsic folding. However, the structure of the ligand-binding pocket does undergo subtle but significant conformational changes upon cofactor binding. On the basis of these observations, we generated a homology model of MEF2 bound to a myocardin family protein, MASTR, that acts as a potent coactivator of MEF2-dependent gene expression. The model shows excellent shape and chemical complementarity at the binding interface and is consistent with existing mutagenesis data. The apo structure presented here can also serve as a target for virtual screening and soaking studies of small molecules that can modulate the function of MEF2 as research tools and therapeutic leads.

Indexed as

Amino Acid SequenceBinding SitesCoenzymesCrystallography, X-RayDimerizationDNAHumansMADS Domain ProteinsMEF2 Transcription FactorsModels, MolecularMolecular Sequence DataMyocardinMyogenic Regulatory FactorsNuclear ProteinsProtein BindingProtein ConformationCoenzymesDNAMADS Domain ProteinsMEF2A protein, humanMEF2 Transcription FactorsMyocardinMyogenic Regulatory FactorsNuclear ProteinsTrans-Activators

Identifiers

PMID20132824
PMCPMC2952653
OpenAlexW2084595283

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.