ArticleMolecular genetics and genomics : MGG2009
Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses.
Article in Molecular genetics and genomics : MGG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 81 citations in OpenAlex.
- Suppression of microRNA168 enhances salt tolerance in rice (Oryza sativa L.).BMC plant biology · 2022Article
- MicroRNAs Are Involved in Regulating Plant Development and Stress Response through Fine-Tuning of TIR1/AFB-Dependent Auxin Signaling.International journal of molecular sciences · 2022Review
- Article
- Ectopic expression of miRNA172 in tomato (Solanum lycopersicum) reveals novel function in fruit development through regulation of an AP2 transcription factor.BMC plant biology · 2020Article
- Identification of microRNA-target modules from rice variety Pusa Basmati-1 under high temperature and salt stress.Functional & integrative genomics · 2019Article
- Functional Identification ofFrontiers in plant science · 2019Article
- Combinatorial Interactions of Biotic and Abiotic Stresses in Plants and Their Molecular Mechanisms: Systems Biology Approach.Molecular biotechnology · 2018Review
- ARMOUR - A Rice miRNA: mRNA Interaction Resource.Frontiers in plant science · 2018Article
- Functional Roles of microRNAs in Agronomically Important Plants-Potential as Targets for Crop Improvement and Protection.Frontiers in plant science · 2017Review
- Abiotic Stress Responsive miRNA-Target Network and Related Markers (SNP, SSR) inFrontiers in plant science · 2017Article
- Parsing the Regulatory Network between Small RNAs and Target Genes in Ethylene Pathway in Tomato.Frontiers in plant science · 2017Article
- Rice Improvement Through Genome-Based Functional Analysis and Molecular Breeding in India.Rice (New York, N.Y.) · 2016Article
- Profiling the expression domains of a rice-specific microRNA under stress.Frontiers in plant science · 2015Article
- Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution.Frontiers in physiology · 2015Review
- Apple ring rot-responsive putative microRNAs revealed by high-throughput sequencing in Malus × domestica Borkh.Molecular biology reports · 2014Article
- Identification of boron-deficiency-responsive microRNAs in Citrus sinensis roots by Illumina sequencing.BMC plant biology · 2014Article
- Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice.Journal of experimental botany · 2014Article
- Plant miRNAome and antiviral resistance: a retrospective view and prospective challenges.Virus genes · 2014Review
- Article
- A comprehensive genome-wide study on tissue-specific and abiotic stress-specific miRNAs in Triticum aestivum.PloS one · 2014Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Most of the physiological processes are controlled by the small RNAs in several organisms including plants. A huge database exists on one type of small RNA, i.e., microRNAs (miRs) identified from diverse species. However, the processes of data-mining of miRs in most of the species are still incomplete. Rice feeds the hungry trillions and hence understanding its developmental processes as well as its stress biology, which might be largely controlled by the small RNA pathways, is certainly a worthwhile task. Here, we report the cloning and identification of approximately 40 new putative miRs from local basmati rice variety in accordance to the annotation suggested by Meyers et al. (Plant Cell 20:3186-3190, 2008). About 23 sequences were derived from rice exposed to salt stress while 18 were derived from rice infected with tungro virus. A few of these putative miRs were common to both. Our data showed that at least two of these miRs were up-regulated in response to both abiotic and biotic stresses. The miR target predictions indicate that most of the putative miRs target specific metabolic processes. The up-regulation of similar miRs in response to two entirely different types of stresses suggests a converging functional role of miRs in managing various stresses. Our findings suggest that more rice miRs need to be identified and a thorough understanding of the function of such miRs will help unravel the mysteries of rice stress biology.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.