Evidence map›Paper›PMID 20129960›Full record

ArticleJournal of clinical microbiology2010

Full-genome sequence analysis of a multirecombinant echovirus 3 strain isolated from sewage in Greece.

Zaharoula Kyriakopoulou, Evaggelos Dedepsidis, Vaia Pliaka, Dimitris Tsakogiannis, Anastassia Pratti, Stamatina Levidiotou-Stefanou, Panayotis Markoulatos

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zaharoula KyriakopoulouDepartment of Biochemistry & Biotechnology, University of Thessaly 26, Ploutonos & Aeolou Str., Larissa 41221, Greece.
Evaggelos Dedepsidis
Vaia Pliaka
Dimitris Tsakogiannis
Anastassia Pratti
Stamatina Levidiotou-Stefanou
Panayotis Markoulatos

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An echovirus 3 (Echo3) strain (strain LR31G7) was isolated from a sewage treatment plant in Greece in 2005. Full-genome molecular, phylogenetic, and SimPlot analyses were conducted in order to reveal the evolutionary pathways of the isolate. Nucleotide and phylogenetic analyses of part of the VP1 genomic region revealed that the isolated strain correlates with Echo3 strains isolated during the same year in France and Japan, implying that the same virus circulated in Europe and Asia. LR31G7 was found to be a recombinant that shares the 3' part of its genome with an Echo25 strain isolated from asymptomatic infants in Norway in 2003. Nucleotide and SimPlot analyses of the VP1-2A junction, where the recombination was located, revealed the exact recombination breakpoint (nucleotides 3357 to 3364). Moreover, there is evidence that recombination events had occurred in 3B-3D region in the evolutionary history of the isolate. Our study indicates that recombination events play major roles in enterovirus evolution and that the circulation of multirecombinant strains with unknown properties could be potentially dangerous for public health.

Indexed as

Genome, ViralRecombination, GeneticSequence Analysis, DNACluster AnalysisEnterovirus B, HumanEvolution, MolecularGreeceHumansMolecular Sequence DataPhylogenyRNA, ViralSewageViral Structural ProteinsRNA, ViralSewageViral Structural Proteins

Identifiers

PMID20129960
PMCPMC2863879

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.