Evidence map›Paper›PMID 20125088›Full record

ArticleMolecular psychiatry2011

Genome-wide association study of recurrent early-onset major depressive disorder.

J Shi, J B Potash, J A Knowles, M M Weissman, W Coryell, W A Scheftner, W B Lawson, J R DePaulo, P V Gejman, A R Sanders and 16 more

Open access · greenAbstract read
In one paragraph

Article in Molecular psychiatry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers, 20 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed, 20 pooled it
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 20 syntheses or guidelines pooled it, 275 citations in OpenAlex.

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  9. The Gene Encoding Protocadherin 9 (PCDH9), a Novel Risk Factor for Major Depressive Disorder.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2018
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  13. Association of HTR2A T102C and A-1438G polymorphisms with susceptibility to major depressive disorder: a meta-analysis.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2014
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  18. No association of genetic variants in BDNF with major depression: a meta- and gene-based analysis.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2013
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87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 10 institutions in 2 countries.

J ShiDepartment of Psychiatry, Stanford University, Stanford, CA, USA.
J B Potash
J A Knowles
M M Weissman
W Coryell
W A Scheftner
W B Lawson
J R DePaulo
P V Gejman
A R Sanders
J K Johnson
P Adams
S Chaudhury
D Jancic
O Evgrafov
A Zvinyatskovskiy
N Ertman
M Gladis
K Neimanas
M Goodell
N Hale
N Ney
R Verma
D Mirel
P Holmans
D F Levinson
Stanford University · USJohns Hopkins University · USColumbia University · USNorthShore University HealthSystem · USRush University · USUniversity of Iowa · USUniversity of Southern California · USBroad Institute · USCardiff University · GBHoward University · US

Funding

AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
GENETICS OF RECURRENT EARLY-ONSET DEPRESSIONR01MH061686 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI LEVINSON, DOUGLAS FREDERICK · 1999 to 2008
$3.8M
NCRR NIH HHS U54 RR020278NIMH NIH HHS R01 MH061686
6 · The paper itself

Abstract

A genome-wide association study was carried out in 1020 case subjects with recurrent early-onset major depressive disorder (MDD) (onset before age 31) and 1636 control subjects screened to exclude lifetime MDD. Subjects were genotyped with the Affymetrix 6.0 platform. After extensive quality control procedures, 671 424 autosomal single nucleotide polymorphisms (SNPs) and 25 068 X chromosome SNPs with minor allele frequency greater than 1% were available for analysis. An additional 1 892 186 HapMap II SNPs were analyzed based on imputed genotypic data. Single-SNP logistic regression trend tests were computed, with correction for ancestry-informative principal component scores. No genome-wide significant evidence for association was observed, assuming that nominal P<5 × 10(-8) approximates a 5% genome-wide significance threshold. The strongest evidence for association was observed on chromosome 18q22.1 (rs17077540, P=1.83 × 10(-7)) in a region that has produced some evidence for linkage to bipolar-I or -II disorder in several studies, within an mRNA detected in human brain tissue (BC053410) and approximately 75 kb upstream of DSEL. Comparing these results with those of a meta-analysis of three MDD GWAS data sets reported in a companion article, we note that among the strongest signals observed in the GenRED sample, the meta-analysis provided the greatest support (although not at a genome-wide significant level) for association of MDD to SNPs within SP4, a brain-specific transcription factor. Larger samples will be required to confirm the hypothesis of association between MDD (and particularly the recurrent early-onset subtype) and common SNPs.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAdultAgedChromosome MappingEuropeFemaleGene FrequencyGenotypeHumansLogistic ModelsMajor Depressive DisorderMaleMicroarray AnalysisMiddle AgedPolymorphism, Single NucleotideSP4 protein, humanSp4 Transcription Factor

Identifiers

PMID20125088
PMCPMC6486400
OpenAlexW2078151387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.