Evidence map›Paper›PMID 20123715›Full record

ArticleInfection and immunity2010

Expression of the BabA adhesin during experimental infection with Helicobacter pylori.

Cathy M Styer, Lori M Hansen, Cara L Cooke, Amy M Gundersen, Sung Sook Choi, Douglas E Berg, Mohammed Benghezal, Barry J Marshall, Richard M Peek, Thomas Borén and 1 more

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.

  1. Pooled it
  2. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  3. Multiple TonB-dependent transport systems inInfection and immunity · 2026
    Article
  4. Managing dangerous liaisons: lessons fromJournal of bacteriology · 2026
    Review
  5. Article
  6. Frontiers in immunology · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Frontiers in immunology · 2022
    Review
  13. Enhanced Fitness of a Helicobacter pyloriInfection and immunity · 2021
    Article
  14. Toxins · 2021
    Review
  15. mBio · 2020
    Article
  16. Article
  17. Role of a Stem-Loop Structure inInfection and immunity · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Cathy M StyerDepartment of Medicine and Microbiology, Center for Comparative Medicine, University of California, Davis School of Medicine, Davis, California 95616, USA.
Lori M Hansen
Cara L Cooke
Amy M Gundersen
Sung Sook Choi
Douglas E Berg
Mohammed Benghezal
Barry J Marshall
Richard M Peek
Thomas Borén
Jay V Solnick
University of Western Australia · AUWashington University in St. Louis · USUmeå University · SEUniversity of California, Davis · USVanderbilt University · US

Funding

Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2009 to 2026
$27.5M
H.Pylori Relationship to Digestive Diseases and CancerR01CA077955 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2003 to 2026
$9.7M
Helicobacter Pylori and Gastrointestinal BiologyR01DK058587 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PEEK, RICHARD M. · 2001 to 2024
$7.8M
Animal Models of Infectious Diseases Training ProgramT32AI060555 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI MCSORLEY, STEPHEN J · 2004 to 2025
$3.3M
Gene expression during H. pylori-host interactionsR01AI042081 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI SOLNICK, JAY V. · 1998 to 2007
$2.5M
Modulation of Outer Membrane Protein Expressin in Helicobacter pyloriR01AI070803 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SOLNICK, JAY V. · 2008 to 2012
$2.4M
H.PYLORI POPULATION GENETICS AND GENOME EVOLUTIONR01DK063041 · NIDDK · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2003 to 2007
$1.6M
H PYLORI RELATIONSHIP TO DIGESTIVE DISEASES AND CANCERR29CA077955 · NCI · VANDERBILT UNIVERSITY · PI PEEK, RICHARD M · 1997 to 2001
$294k
NCI NIH HHS CA116087NCI NIH HHS CA77955NCI NIH HHS P01 CA116087NCI NIH HHS R01 CA077955NCI NIH HHS R29 CA077955NIAID NIH HHS AI070803NIAID NIH HHS AI42081NIAID NIH HHS R01 AI042081NIAID NIH HHS R01 AI070803NIAID NIH HHS T32 AI060555NIAID NIH HHS T32 AI60555NIDDK NIH HHS DK58587NIDDK NIH HHS DK63041NIDDK NIH HHS R01 DK058587NIDDK NIH HHS R01 DK063041
6 · The paper itself

Abstract

The Helicobacter pylori babA gene encodes an outer membrane protein that mediates binding to fucosylated ABH antigens of the ABO blood group. We recently demonstrated that BabA expression is lost during experimental infection of rhesus macaques with H. pylori J166. We sought to test the generality of this observation by comparison of different H. pylori strains and different animal hosts. Challenge of macaques with H. pylori J99 yielded output strains that lost BabA expression, either by selection and then expansion of a subpopulation of J99 that had a single-base-pair mutation that encoded a stop codon or by gene conversion of babA with a duplicate copy of babB, a paralog of unknown function. Challenge of mice with H. pylori J166, which unlike J99, has 5' CT repeats in babA, resulted in loss of BabA expression due to phase variation. In the gerbil, Leb binding was lost by replacement of the babA gene that encoded Leb binding with a nonbinding allele that differed at six amino acid residues. Complementation experiments confirmed that change in these six amino acids of BabA was sufficient to eliminate binding to Leb and to gastric tissue. These results demonstrate that BabA expression in vivo is highly dynamic, and the findings implicate specific amino acid residues as critical for binding to fucosylated ABH antigens. We hypothesize that modification of BabA expression during H. pylori infection is a mechanism to adapt to changing conditions of inflammation and glycan expression at the epithelial surface.

Indexed as

Bacterial AdhesionAdaptation, BiologicalAdhesins, BacterialAnimalsDNA, BacterialFemaleGastric MucosaGene Knockout TechniquesGenetic Complementation TestGerbillinaeHelicobacter InfectionsHelicobacter pyloriHumansMacaca mulattaMaleMiceadhesin, helicobacterAdhesins, BacterialBabA protein, Helicobacter pyloriDNA, Bacterial

Identifiers

PMID20123715
PMCPMC2849406
OpenAlexW2152667563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.