Evidence map›Paper›PMID 20123128›Full record

ArticleJournal of structural biology2010

Structural fold, conservation and Fe(II) binding of the intracellular domain of prokaryote FeoB.

Kuo-Wei Hung, Yi-Wei Chang, Edward T Eng, Jai-Hui Chen, Yi-Chung Chen, Yuh-Ju Sun, Chwan-Deng Hsiao, Gang Dong, Krasimir A Spasov, Vinzenz M Unger and 1 more

Abstract readComparative Study
In one paragraph

Article in Journal of structural biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. The structure of the full catalytic cycle ofbioRxiv : the preprint server for biology · 2025
    Article
  2. Article
  3. Article
  4. Structural Determinants ofbioRxiv : the preprint server for biology · 2024
    Article
  5. Review
  6. Review
  7. Genetic and structural determinants on iron assimilation pathways in the plant pathogen Xanthomonas citri subsp. citri and Xanthomonas sp.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Review
  8. Article
  9. Article
  10. Toward a mechanistic understanding of Feo-mediated ferrous iron uptake.Metallomics : integrated biometal science · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structure of an atypical FeoB G-domain reveals a putative domain-swapped dimer.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  16. Article
  17. Article
  18. The structure of an N11A mutant of the G-protein domain of FeoB.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kuo-Wei HungInstitute of Biomedical Sciences, Academia Sinica, Taipei, Taiwan, ROC.
Yi-Wei Chang
Edward T Eng
Jai-Hui Chen
Yi-Chung Chen
Yuh-Ju Sun
Chwan-Deng Hsiao
Gang Dong
Krasimir A Spasov
Vinzenz M Unger
Tai-Huang Huang

Funding

Role of G protein Coupling in Fe(ll)-Uptake in BacteriaR01GM066145 · NIGMS · YALE UNIVERSITY · PI UNGER, VINZENZ M · 2002 to 2006
$1.3M
NIGMS NIH HHS GM66145NIGMS NIH HHS R01 GM066145
6 · The paper itself

Abstract

FeoB is a G-protein coupled membrane protein essential for Fe(II) uptake in prokaryotes. Here, we report the crystal structures of the intracellular domain of FeoB (NFeoB) from Klebsiella pneumoniae (KpNFeoB) and Pyrococcus furiosus (PfNFeoB) with and without bound ligands. In the structures, a canonical G-protein domain (G domain) is followed by a helical bundle domain (S-domain), which despite its lack of sequence similarity between species is structurally conserved. In the nucleotide-free state, the G-domain's two switch regions point away from the binding site. This gives rise to an open binding pocket whose shallowness is likely to be responsible for the low nucleotide-binding affinity. Nucleotide binding induced significant conformational changes in the G5 motif which in the case of GMPPNP binding was accompanied by destabilization of the switch I region. In addition to the structural data, we demonstrate that Fe(II)-induced foot printing cleaves the protein close to a putative Fe(II)-binding site at the tip of switch I, and we identify functionally important regions within the S-domain. Moreover, we show that NFeoB exists as a monomer in solution, and that its two constituent domains can undergo large conformational changes. The data show that the S-domain plays important roles in FeoB function.

Indexed as

Amino Acid SequenceBacterial ProteinsBinding SitesCation Transport ProteinsCrystallography, X-RayFerrous CompoundsGTP-Binding ProteinsKineticsKlebsiella pneumoniaeModels, MolecularMolecular Sequence DataProtein ConformationProtein FoldingProtein Structure, TertiaryPyrococcus furiosusRecombinant ProteinsBacterial ProteinsCation Transport ProteinsFerrous CompoundsGTP-Binding ProteinsRecombinant Proteins

Identifiers

PMID20123128
PMCPMC2946837

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.