Evidence map›Paper›PMID 20123079›Full record

ReviewBiochimica et biophysica acta

Nhp6: a small but powerful effector of chromatin structure in Saccharomyces cerevisiae.

David J Stillman

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Article
  2. Review
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  5. Article
  6. Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. NaMicroscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2022
    Article
  8. Article
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  11. Review
  12. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

David J StillmanDepartment of Pathology, University of Utah Health Sciences Center, Salt Lake City, UT 84112, USA. david.stillman@path.utah.edu

Funding

Biochemical, Genetic, and Genomic Analysis of Nucleosome Reorganization by FACTR01GM064649 · NIGMS · UNIVERSITY OF UTAH · PI FORMOSA, TIMOTHY G · 2002 to 2022
$6.4M
MOLECULAR MECHANISMS IN TRANSCRIPTIONAL REGULATIONR01GM039067 · NIGMS · UNIVERSITY OF UTAH · PI STILLMAN, DAVID J · 1988 to 2013
$3.9M
PROMOTER SPECIFICITY OF TRANSCRIPTION FACTORSR01GM048624 · NIGMS · UNIVERSITY OF UTAH · PI STILLMAN, DAVID J · 1993 to 2010
$2.7M
NIGMS NIH HHS R01 GM039067NIGMS NIH HHS R01 GM048624NIGMS NIH HHS R01 GM064649NIGMS NIH HHS R01-GM39067NIGMS NIH HHS R01-GM64649
6 · The paper itself

Abstract

The small Nhp6 protein from budding yeast is an abundant protein that binds DNA non-specifically and bends DNA sharply. It contains only a single HMGB domain that binds DNA in the minor groove and a basic N-terminal extension that wraps around DNA to contact the major groove. This review describes the genetic and biochemical experiments that indicate Nhp6 functions in promoting RNA pol III transcription, in formation of preinitiation complexes at promoters transcribed by RNA pol II, and in facilitating the activity of chromatin modifying complexes. The FACT complex may provide a paradigm for how Nhp6 functions with chromatin factors, as Nhp6 allows Spt16-Pob3 to bind to and reorganize nucleosomes in vitro.

Indexed as

ChromatinDNA-Binding ProteinsDNA, FungalHMGN ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticChromatinDNA-Binding ProteinsDNA, FungalHMGN ProteinsNHP6A protein, S cerevisiaeNHP6B protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID20123079
PMCPMC2818483

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.