ArticlePlant physiology2010
Genomic analysis of wild tomato introgressions determining metabolism- and yield-associated traits.
Article in Plant physiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed, 60 citations in OpenAlex.
- Article
- Single Primer Enrichment Technology (SPET) for High-Throughput Genotyping in Tomato and Eggplant Germplasm.Frontiers in plant science · 2019Article
- DuplicatedPeerJ · 2019Article
- New insights into tomato microRNAs.Scientific reports · 2018Article
- Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors.BMC plant biology · 2018Article
- Regulatory Divergence in the Stress Response of Tomato.The Plant cell · 2018Article
- Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato.The Plant cell · 2018Article
- Back into the wild-Apply untapped genetic diversity of wild relatives for crop improvement.Evolutionary applications · 2017Review
- Genome-wide identification and expression analysis of the IQD gene family in moso bamboo (Phyllostachys edulis).Scientific reports · 2016Article
- Article
- The genome of the stress-tolerant wild tomato species Solanum pennellii.Nature genetics · 2014Article
- Article
- Using a periclinal chimera to unravel layer-specific gene expression in plants.The Plant journal : for cell and molecular biology · 2013Article
- Linking the potato genome to the conserved ortholog set (COS) markers.BMC genetics · 2013Article
- Metabolic engineering of tomato fruit organic acid content guided by biochemical analysis of an introgression line.Plant physiology · 2013Article
- TARE1, a mutated Copia-like LTR retrotransposon followed by recent massive amplification in tomato.PloS one · 2013Article
- Role of an esterase in flavor volatile variation within the tomato clade.Proceedings of the National Academy of Sciences of the United States of America · 2012Article
- Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice.Functional & integrative genomics · 2012Article
- Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population.Plant physiology · 2011Article
- Genetic dissection of vitamin E biosynthesis in tomato.Journal of experimental botany · 2011Article
Corrections and comments
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Authors and funding
11 authors at 7 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the aim of determining the genetic basis of metabolic regulation in tomato fruit, we constructed a detailed physical map of genomic regions spanning previously described metabolic quantitative trait loci of a Solanum pennellii introgression line population. Two genomic libraries from S. pennellii were screened with 104 colocated markers from five selected genomic regions, and a total of 614 bacterial artificial chromosome (BAC)/cosmids were identified as seed clones. Integration of sequence data with the genetic and physical maps of Solanum lycopersicum facilitated the anchoring of 374 of these BAC/cosmid clones. The analysis of this information resulted in a genome-wide map of a nondomesticated plant species and covers 10% of the physical distance of the selected regions corresponding to approximately 1% of the wild tomato genome. Comparative analyses revealed that S. pennellii and domesticated tomato genomes can be considered as largely colinear. A total of 1,238,705 bp from both BAC/cosmid ends and nine large insert clones were sequenced, annotated, and functionally categorized. The sequence data allowed the evaluation of the level of polymorphism between the wild and cultivated tomato species. An exhaustive microsynteny analysis allowed us to estimate the divergence date of S. pennellii and S. lycopersicum at 2.7 million years ago. The combined results serve as a reference for comparative studies both at the macrosyntenic and microsyntenic levels. They also provide a valuable tool for fine-mapping of quantitative trait loci in tomato. Furthermore, they will contribute to a deeper understanding of the regulatory factors underpinning metabolism and hence defining crop chemical composition.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.