Evidence map›Paper›PMID 20118260›Full record

ArticleJournal of bacteriology2010

Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence factor.

Christopher D Bahl, Christophe Morisseau, Jennifer M Bomberger, Bruce A Stanton, Bruce D Hammock, George A O'Toole, Dean R Madden

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
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  11. Microorganisms · 2019
    Review
  12. Review
  13. Article
  14. Article
  15. Effects ofAmerican journal of physiology. Cell physiology · 2017
    Review
  16. Article
  17. Pseudomonas aeruginosa sabotages the generation of host proresolving lipid mediators.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  18. Non-Coding RNAs are Differentially Expressed byThe open microbiology journal · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Christopher D BahlDepartment of Biochemistry, Dartmouth Medical School, Hanover, NH 03755, USA.
Christophe Morisseau
Jennifer M Bomberger
Bruce A Stanton
Bruce D Hammock
George A O'Toole
Dean R Madden
Dartmouth College · USUniversity of California, Davis · US

Funding

HOST-MICROBE INTERACTIONST32AI007519 · NIAID · DARTMOUTH COLLEGE · PI DEBORAH A HOGAN · 1997 to 2026
$5.9M
Role of Virulence Factors in Pseudomonas-Host InteractionsR01HL074175 · NHLBI · DARTMOUTH COLLEGE · PI STANTON, BRUCE A. · 2003 to 2018
$5.0M
HYDROLYTIC ENZYMES IN THE METABOLISM OF TOXINSR01ES002710 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1985 to 2018
$4.0M
cdiGMP regulation of Biofilm FormationR01AI083256 · NIAID · DARTMOUTH COLLEGE · PI O'TOOLE, GEORGE A. · 2009 to 2013
$1.9M
Keeping CFTR in its Place: An Integrated Small-Molecule ApproachR01DK075309 · NIDDK · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2008 to 2011
$1.7M
Metabolomic study of ozone and nitronaphthalene toxicityR01ES013933 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 2005 to 2009
$1.5M
NHLBI NIH HHS R01 HL074175NHLBI NIH HHS R01-HL074175NIAID NIH HHS R01 AI083256NIAID NIH HHS T32 AI007519NIAID NIH HHS T32-AI007519NIDDK NIH HHS R01 DK075309NIDDK NIH HHS R01-DK075309NIEHS NIH HHS R01 ES002710NIEHS NIH HHS R01-ES002710NIEHS NIH HHS R01 ES013933NIEHS NIH HHS R01-ES013933
6 · The paper itself

Abstract

Cystic fibrosis transmembrane conductance regulator (CFTR) inhibitory factor (Cif) is a virulence factor secreted by Pseudomonas aeruginosa that reduces the quantity of CFTR in the apical membrane of human airway epithelial cells. Initial sequence analysis suggested that Cif is an epoxide hydrolase (EH), but its sequence violates two strictly conserved EH motifs and also is compatible with other alpha/beta hydrolase family members with diverse substrate specificities. To investigate the mechanistic basis of Cif activity, we have determined its structure at 1.8-A resolution by X-ray crystallography. The catalytic triad consists of residues Asp129, His297, and Glu153, which are conserved across the family of EHs. At other positions, sequence deviations from canonical EH active-site motifs are stereochemically conservative. Furthermore, detailed enzymatic analysis confirms that Cif catalyzes the hydrolysis of epoxide compounds, with specific activity against both epibromohydrin and cis-stilbene oxide, but with a relatively narrow range of substrate selectivity. Although closely related to two other classes of alpha/beta hydrolase in both sequence and structure, Cif does not exhibit activity as either a haloacetate dehalogenase or a haloalkane dehalogenase. A reassessment of the structural and functional consequences of the H269A mutation suggests that Cif's effect on host-cell CFTR expression requires the hydrolysis of an extended endogenous epoxide substrate.

Indexed as

Catalytic DomainAmino Acid SequenceBacterial ProteinsConserved SequenceCrystallography, X-RayEpoxide HydrolasesModels, MolecularMolecular Sequence DataProtein Structure, TertiarySequence Homology, Amino AcidSubstrate SpecificityVirulence FactorsBacterial ProteinsCif protein, Pseudomonas aeruginosaEpoxide HydrolasesVirulence Factors

Identifiers

PMID20118260
PMCPMC2838060
OpenAlexW2140285444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.