Evidence map›Paper›PMID 20118243›Full record

ArticleThe Journal of biological chemistry2010

Molecular interfaces of the galactose-binding protein Tectonin domains in host-pathogen interaction.

Diana Hooi Ping Low, Vladimir Frecer, Agnès Le Saux, Ganesh Anand Srinivasan, Bow Ho, Jianzhu Chen, Jeak Ling Ding

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Identification ofFrontiers in microbiology · 2019
    Article
  3. Review
  4. A review on host-pathogen interactions: classification and prediction.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2016
    Review
  5. Article
  6. If it is methylated it must be Tectonic.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Methylated glycans as conserved targets of animal and fungal innate defense.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 4 countries.

Diana Hooi Ping LowComputational and Systems Biology, Singapore-Massachusetts Institute of Technology Alliance, Singapore 117576; Departments of Biological Sciences, Singapore 117543.
Vladimir FrecerLaboratory of Molecular Biostructural and Nanomaterial Modeling, AREA Science Park, Trieste 34149, Italy; Cancer Research Institute, Slovak Academy of Sciences, 83391 Bratislava, Slovakia.
Agnès Le SauxDepartments of Biological Sciences, Singapore 117543.
Ganesh Anand SrinivasanDepartments of Biological Sciences, Singapore 117543.
Bow HoMicrobiology, National University of Singapore, Singapore 117543.
Jianzhu ChenComputational and Systems Biology, Singapore-Massachusetts Institute of Technology Alliance, Singapore 117576; Koch Institute for Integrative Cancer Research and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142.
Jeak Ling DingComputational and Systems Biology, Singapore-Massachusetts Institute of Technology Alliance, Singapore 117576; Departments of Biological Sciences, Singapore 117543. Electronic address: dbsdjl@nus.edu.sg.
Massachusetts Institute of Technology · USAREA Science Park · ITNational University of Singapore · SGSingapore-MIT Alliance for Research and Technology · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beta-propeller proteins function in catalysis, protein-protein interaction, cell cycle regulation, and innate immunity. The galactose-binding protein (GBP) from the plasma of the horseshoe crab, Carcinoscorpius rotundicauda, is a beta-propeller protein that functions in antimicrobial defense. Studies have shown that upon binding to Gram-negative bacterial lipopolysaccharide (LPS), GBP interacts with C-reactive protein (CRP) to form a pathogen-recognition complex, which helps to eliminate invading microbes. However, the molecular basis of interactions between GBP and LPS and how it interplays with CRP remain largely unknown. By homology modeling, we showed that GBP contains six beta-propeller/Tectonin domains. Ligand docking indicated that Tectonin domains 6 to 1 likely contain the LPS binding sites. Protein-protein interaction studies demonstrated that Tectonin domain 4 interacts most strongly with CRP. Hydrogen-deuterium exchange mass spectrometry mapped distinct sites of GBP that interact with LPS and with CRP, consistent with in silico predictions. Furthermore, infection condition (lowered Ca(2+) level) increases GBP-CRP affinity by 1000-fold. Resupplementing the system with a physiological level of Ca(2+) did not reverse the protein-protein affinity to the basal state, suggesting that the infection-induced complex had undergone irreversible conformational change. We propose that GBP serves as a bridging molecule, participating in molecular interactions, GBP-LPS and GBP-CRP, to form a stable pathogen-recognition complex. The interaction interfaces in these two partners suggest that Tectonin domains can differentiate self/nonself, crucial to frontline defense against infection. In addition, GBP shares architectural and functional homologies to a human protein, hTectonin, suggesting its evolutionarily conservation for approximately 500 million years, from horseshoe crab to human.

Indexed as

Amino Acid SequenceAnimalsBiological EvolutionCalcium-Binding ProteinsConserved SequenceHorseshoe CrabsHost-Pathogen InteractionsLigandsMembrane ProteinsMolecular Sequence DataMonosaccharide Transport ProteinsPeriplasmic Binding ProteinsProtein BindingProtein Structure, TertiaryPseudomonas aeruginosaSequence Homology, Amino AcidCalcium-Binding Proteinsgalactose-binding proteinLigandsMembrane ProteinsMonosaccharide Transport ProteinsPeriplasmic Binding Proteinstectonin I

Identifiers

PMID20118243
PMCPMC2843237
OpenAlexW1964340982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.