Evidence map›Paper›PMID 20118193›Full record

ArticleMolecular biology and evolution2010

Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses.

Katrina G Claw, Raul Y Tito, Anne C Stone, Brian C Verrelli

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  4. Population genetic variation ofJournal of genetics · 2021
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  5. THE EXPOSOME IN HUMAN EVOLUTION: FROM DUST TO DIESEL.The Quarterly review of biology · 2019
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  10. Review
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  14. The evolutionary history of SLC6A4 and the role of plasticity in Macaca.American journal of physical anthropology · 2014
    Article
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  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Katrina G ClawCenter for Evolutionary Functional Genomics, The Biodesign Institute and School of Life Sciences, Arizona State University, Tempe, AZ, USA.
Raul Y Tito
Anne C Stone
Brian C Verrelli
Arizona State University · US

Funding

ESTABLISHMENT/MAINTENANCE OF BIOMEDICAL RESEARCH COLONYU42RR015087 · NCRR · UNIVERSITY OF LOUISIANA AT LAFAYETTE · PI ROWELL, THOMAS J · 2000 to 2011
$11.8M
Arizona State University PREP for Biomedical ResearchR25GM071798 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HOGUE, BRENDA G. · 2004 to 2014
$2.4M
NCRR NIH HHS U42 RR015087NCRR NIH HHS U42-RR015087NIGMS NIH HHS R25 GM071798NIGMS NIH HHS R25-GM071798
6 · The paper itself

Abstract

Genetic variation in the human serotonin system has long-been studied because of its functional consequences and links to various behavior-related disorders and it being routinely targeted in research and development for drug therapy. However, aside from clinical studies, little is known about this genetic diversity and how it differs within and between human populations with respect to haplotype structure, which can greatly impact phenotype association studies. In addition, no evolutionary approach among humans and other primates has examined how long- and short-term selective pressures explain existing serotonin variation. Here, we examine DNA sequence variation in natural population samples of 192 human and 40 chimpanzee chromosome sequences for the most commonly implicated approximately 38-kb serotonin transporter (SLC6A4) and approximately 63-kb serotonin 2A receptor (HTR2A) genes. Our comparative population genetic analyses find significant linkage disequilibrium associated with functionally relevant variants in humans, as well as geographic variation for these haplotypes, at both loci. In addition, although amino acid divergence is consistent with purifying selection, promoter and untranslated regions exhibit significantly high divergence in both species lineages. These evolutionary analyses imply that the serotonin system may have accumulated significant regulatory variation over both recent and ancient periods of time in both humans and chimpanzees. We discuss the implications of this variation for disease association studies and for the evolution of behavior-related phenotypes during the divergence of humans and our closest primate relatives.

Indexed as

Genetics, BehavioralGenetic VariationAnimalsBiological EvolutionHaplotypesHumansLinkage DisequilibriumPan troglodytesPolymerase Chain ReactionPolymorphism, Single NucleotideReceptors, Serotonin, 5-HT2Selection, GeneticSerotonin Plasma Membrane Transport ProteinsReceptors, Serotonin, 5-HT2Serotonin Plasma Membrane Transport Proteins

Identifiers

PMID20118193
PMCPMC2912469
OpenAlexW2168403255

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.