Evidence map›Paper›PMID 20118192›Full record

ArticleMolecular biology and evolution2010

Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

Andrew J Alverson, XiaoXin Wei, Danny W Rice, David B Stern, Kerrie Barry, Jeffrey D Palmer

Open access · greenAbstract read
In one paragraph

Article in Molecular biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 332 papers.

0numbers the graph read from it
0cells of the map it votes in
332citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

332 citing papers in PubMed, 702 citations in OpenAlex.

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  17. Newly assembled mitochondrial genomes ofFrontiers in plant science · 2026
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  19. The complete mitochondrial genome ofFrontiers in plant science · 2026
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  20. Article

272 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Andrew J AlversonDepartment of Biology, Indiana University, USA. andy.alverson@gmail.com
XiaoXin Wei
Danny W Rice
David B Stern
Kerrie Barry
Jeffrey D Palmer
Indiana University · USCornell University · USJoint Genome Institute · US

Funding

Horizontal Gene Transfer in Multicellular EukaryotesR01GM070612 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI PALMER, JEFFREY D · 2005 to 2008
$1.6M
Evolutionary Genomics of Supersized Mitochondrial GenomesF32GM080079 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI ALVERSON, ANDREW J · 2007 to 2009
$148k
NIGMS NIH HHS 1F32GM080079-01A1NIGMS NIH HHS F32 GM080079NIGMS NIH HHS R01 GM070612NIGMS NIH HHS R01-GM-70612
6 · The paper itself

Abstract

The mitochondrial genomes of seed plants are unusually large and vary in size by at least an order of magnitude. Much of this variation occurs within a single family, the Cucurbitaceae, whose genomes range from an estimated 390 to 2,900 kb in size. We sequenced the mitochondrial genomes of Citrullus lanatus (watermelon: 379,236 nt) and Cucurbita pepo (zucchini: 982,833 nt)--the two smallest characterized cucurbit mitochondrial genomes--and determined their RNA editing content. The relatively compact Citrullus mitochondrial genome actually contains more and longer genes and introns, longer segmental duplications, and more discernibly nuclear-derived DNA. The large size of the Cucurbita mitochondrial genome reflects the accumulation of unprecedented amounts of both chloroplast sequences (>113 kb) and short repeated sequences (>370 kb). A low mutation rate has been hypothesized to underlie increases in both genome size and RNA editing frequency in plant mitochondria. However, despite its much larger genome, Cucurbita has a significantly higher synonymous substitution rate (and presumably mutation rate) than Citrullus but comparable levels of RNA editing. The evolution of mutation rate, genome size, and RNA editing are apparently decoupled in Cucurbitaceae, reflecting either simple stochastic variation or governance by different factors.

Indexed as

Evolution, MolecularGenome, MitochondrialGenome, PlantCitrullusCucurbitaIntronsModels, GeneticMutationRepetitive Sequences, Nucleic AcidRNA EditingRNA, TransferRNA, Transfer

Identifiers

PMID20118192
PMCPMC2877997
OpenAlexW2097659302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.