Evidence map›Paper›PMID 20117839›Full record

ArticleMolecular immunology2010

Identification of the early VIP-regulated transcriptome and its associated, interactome in resting and activated murine CD4 T cells.

Sheri Tinnell Dorsam, Emilie Vomhof-Dekrey, Rebecca J Hermann, Jodie S Haring, Travis Van der Steen, Erich Wilkerson, Goran Boskovic, James Denvir, Yulia Dementieva, Donald Primerano and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  6. Toll-like receptor 5 engagement induces interleukin-17C expression in intestinal epithelial cells.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2012
    Article
  7. Article
  8. Article
  9. Article
  10. Vasoactive intestinal peptide signaling axis in human leukemia.World journal of biological chemistry · 2011
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Sheri Tinnell DorsamDepartment of Chemistry and Molecular Biology, North Dakota State University, Fargo, ND 58108-6050, USA.
Emilie Vomhof-Dekrey
Rebecca J Hermann
Jodie S Haring
Travis Van der Steen
Erich Wilkerson
Goran Boskovic
James Denvir
Yulia Dementieva
Donald Primerano
Glenn Paul Dorsam
North Dakota State University · USMarshall University · US

Funding

WVU &MU NEW FACULTY GRANTSP20RR016477 · NCRR · MARSHALL UNIVERSITY · PI RANKIN, GARY O · 2001 to 2011
$35.5M
TARGETING AND DELIVERYP20RR015566 · NCRR · NORTH DAKOTA STATE UNIVERSITY · PI SIBI, MUKUND P. · 2001 to 2011
$19.0M
Transcription Factors in CancerP20RR020180 · NCRR · MARSHALL UNIVERSITY · PI NILES, RICHARD M. · 2004 to 2009
$9.5M
HETEROCHROMATIN RECRUITMENT OF THE VPAC1 LOCUS BY IKAROSK01DK064828 · NIDDK · NORTH DAKOTA STATE UNIVERSITY · PI DORSAM, GLENN PAUL · 2004 to 2010
$593k
NCRR NIH HHS 2P20 RR015566NCRR NIH HHS 5P20RR016477NCRR NIH HHS 5P20RR020180NCRR NIH HHS P20 RR015566NCRR NIH HHS P20 RR016477NCRR NIH HHS P20 RR020180NIDDK NIH HHS K01 DK064828
6 · The paper itself

Abstract

More than 40 years after the discovery of vasoactive intestinal peptide (VIP), its transcriptome in the immune system has still not been completely elucidated. In an attempt to understand the biological role of this neuropeptide in immunity, we chose CD4 T cells as a cellular system. Agilent Mouse Whole Genome microarrays were hybridized with fluorescently labeled total RNA isolated from resting CD4 T cells cultured +/-10(-7)M VIP for 5h or PMA/ionomycin activated CD4 T cells cultured +/-10(-7)M VIP for 5h. These VIP-regulated transcriptomes were analyzed by Significance Analysis of Microarrays (SAM) and Ingenuity Pathway Analysis (IPA) software to identify relevant signaling pathways modulated by VIP in the absence and presence of T cell activation. In resting CD4 T cells, VIP-modulated 368 genes, ranging from 3.49 to -4.78-fold. In the PMA/ionomycin activated CD4 T cells, 326 gene expression levels were changed by VIP, ranging from 2.94 to -1.66-fold. IPA analysis revealed that VIP exposure alters cellular function through EGFR signaling in resting CD4 T cells, and modulates immediate early genes, Fos and CREM/ICER, in activated CD4 T cells. These gene expression changes are suggested to explain at a molecular level how VIP can regulate T cell homing to the gut and induce regulatory T cell generation.

Indexed as

Gene Expression ProfilingAnimalsCD4-Positive T-LymphocytesFemaleGene Expression RegulationGene Regulatory NetworksLymphocyte ActivationMaleMiceMice, Inbred C57BLOligonucleotide Array Sequence AnalysisPhenotypeReceptors, Vasoactive Intestinal PeptideReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionSignal TransductionReceptors, Vasoactive Intestinal PeptideTetradecanoylphorbol AcetateVasoactive Intestinal Peptide

Identifiers

PMID20117839
PMCPMC2834953
OpenAlexW2004362944

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.