Evidence map›Paper›PMID 20113475›Full record

ArticleBMC evolutionary biology2010

The synapsin gene family in basal chordates: evolutionary perspectives in metazoans.

Simona Candiani, Luca Moronti, Roberta Pennati, Fiorenza De Bernardi, Fabio Benfenati, Mario Pestarino

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Alterations of presynaptic proteins in autism spectrum disorder.Frontiers in molecular neuroscience · 2022
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  5. miR-7 Knockdown by Peptide Nucleic Acids in the AscidianInternational journal of molecular sciences · 2019
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  6. Reflections on the evolution of the vertebrate tissue inhibitors of metalloproteinases.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Review
  7. Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Simona CandianiDepartment of Biology, University of Genoa, Viale Benedetto XV5, 16132 Genova, Italy. candiani@unige.it
Luca Moronti
Roberta Pennati
Fiorenza De Bernardi
Fabio Benfenati
Mario Pestarino
University of Genoa · ITUniversity of Milan · ITItalian Institute of Technology · IT

Funding

Telethon GGP09134
6 · The paper itself

Abstract

backgroundSynapsins are neuronal phosphoproteins involved in several functions correlated with both neurotransmitter release and synaptogenesis. The comprehension of the basal role of the synapsin family is hampered in vertebrates by the existence of multiple synapsin genes. Therefore, studying homologous genes in basal chordates, devoid of genome duplication, could help to achieve a better understanding of the complex functions of these proteins.

resultsIn this study we report the cloning and characterization of the Ciona intestinalis and amphioxus Branchiostoma floridae synapsin transcripts and the definition of their gene structure using available C. intestinalis and B. floridae genomic sequences. We demonstrate the occurrence, in both model organisms, of a single member of the synapsin gene family. Full-length synapsin genes were identified in the recently sequenced genomes of phylogenetically diverse metazoans. Comparative genome analysis reveals extensive conservation of the SYN locus in several metazoans. Moreover, developmental expression studies underline that synapsin is a neuronal-specific marker in basal chordates and is expressed in several cell types of PNS and in many, if not all, CNS neurons.

conclusionOur study demonstrates that synapsin genes are metazoan genes present in a single copy per genome, except for vertebrates. Moreover, we hypothesize that, during the evolution of synapsin proteins, new domains are added at different stages probably to cope up with the increased complexity in the nervous system organization. Finally, we demonstrate that protochordate synapsin is restricted to the post-mitotic phase of CNS development and thereby is a good marker of postmitotic neurons.

Indexed as

Evolution, MolecularMultigene FamilyAmino Acid SequenceAnimalsChordata, NonvertebrateCloning, MolecularMolecular Sequence DataPhylogenySequence AlignmentSequence Analysis, DNASequence Analysis, ProteinSynapsinsSynapsins

Identifiers

PMID20113475
PMCPMC2825198
OpenAlexW1968844993

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.