Evidence map›Paper›PMID 20110454›Full record

ArticleThe Journal of molecular diagnostics : JMD2010

Development and evaluation of a multiplex real-time polymerase chain reaction procedure to clinically type prevalent Salmonella enterica serovars.

Nélida Muñoz, Miguel Diaz-Osorio, Jaime Moreno, Miryan Sánchez-Jiménez, Nora Cardona-Castro

Abstract readEvaluation Study
In one paragraph

Article in The Journal of molecular diagnostics : JMD, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Establishment of a Simple, Sensitive, and SpecificFoods (Basel, Switzerland) · 2024
    Article
  3. Review
  4. Article
  5. Rapid Detection and Differentiating of the PredominantFrontiers in cellular and infection microbiology · 2021
    Article
  6. Article
  7. Article
  8. Simultaneous Identification of Clinically CommonFrontiers in cellular and infection microbiology · 2019
    Article
  9. Salmonella in Dairy Cattle.The Veterinary clinics of North America. Food animal practice · 2018
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nélida MuñozGrupo de Microbiología, Instituto Nacional de Salud, Calle 26 51-20 CAN, Bogotá, Colombia. nmunoz@ins.gov.co
Miguel Diaz-Osorio
Jaime Moreno
Miryan Sánchez-Jiménez
Nora Cardona-Castro

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multiplex real-time polymerase chain reaction procedure was developed to identify the most prevalent clinical isolates of Salmonella enterica subsp. enterica. Genes from the rfb, fliC, fljB, and viaB groups that encode the O, H, and Vi antigens were used to design 15 primer pairs and TaqMan probes specific for the genes rfbJ, wzx, fliC, fljB, wcdB, the sdf-l sequence, and invA, which was used as an internal amplification control. The primers and probes were variously combined into six sets. The first round of reactions used two of these sets to detect Salmonella O:4, O:9, O:7, O:8, and O:3,10 serogroups. Once the serogroups were identified, the results of a second round of reactions that used primers and probes for the flagellar antigen l genes, 1,2; e,h; g,m; d; e,n,x; and z(10), and the Vi gene were used to identify individual serovars. The procedure was standardized using 18 Salmonella reference strains and other enterobacteria. The procedure's reliability and sensitivity was evaluated using 267 randomly chosen serotyped Salmonella clinical isolates. The procedure had a sensitivity of 95.5% and was 100% specific. Thus, our technique is a quick, sensitive, reliable, and specific means of identifying S. enterica serovars and can be used in conjunction with traditional serotyping. Other primer and probe combinations could be used to increase the number of identifiable serovars.

Indexed as

Salmonella entericaBacterial ProteinsBacterial Typing TechniquesBase SequenceDNA, BacterialHumansMolecular Sequence DataPolymerase Chain ReactionSalmonella InfectionsSerotypingBacterial ProteinsDNA, Bacterial

Identifiers

PMID20110454
PMCPMC2871729

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.