Evidence map›Paper›PMID 20110330›Full record

ArticleDevelopment (Cambridge, England)2010

Repression of zygotic gene expression in the Xenopus germline.

Thiagarajan Venkatarama, Fangfang Lai, Xueting Luo, Yi Zhou, Karen Newman, Mary Lou King

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. RNA localization during early development of the axolotl.Frontiers in cell and developmental biology · 2023
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Control of zygotic genome activation in Xenopus.Current topics in developmental biology · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. A novel role forDevelopment (Cambridge, England) · 2018
    Article
  13. Article
  14. Article
  15. Maternal Dead-end 1 promotes translation ofDevelopment (Cambridge, England) · 2017
    Article
  16. Article
  17. Transcription factors Mix1 and VegT, relocalization of vegt mRNA, and conserved endoderm and dorsal specification in frogs.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Thiagarajan VenkataramaDepartment of Cell Biology and Anatomy, University of Miami School of Medicine, Miami, FL 33136, USA.
Fangfang Lai
Xueting Luo
Yi Zhou
Karen Newman
Mary Lou King
University of Miami · US

Funding

LOCALIZED RNAS--DORSAL AND GERM CELL DETERMINANTSR01GM033932 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI KING, MARY LOU · 1985 to 2010
$2.8M
Role of Translational Regulators Nanos and Dazl in Preserving TotipotencyR01GM102397 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI KING, MARY LOU · 2013 to 2016
$1.5M
NIGMS NIH HHS GM33932NIGMS NIH HHS R01 GM033932NIGMS NIH HHS R01 GM102397
6 · The paper itself

Abstract

Primordial germ cells (PGCs) in Xenopus are specified through the inheritance of germ plasm. During gastrulation, PGCs remain totipotent while surrounding cells in the vegetal mass become committed to endoderm through the action of the vegetal localized maternal transcription factor VegT. We find that although PGCs contain maternal VegT RNA, they do not express its downstream targets at the mid-blastula transition (MBT). Transcriptional repression in PGCs correlates with the failure to phosphorylate serine 2 in the carboxy-terminal domain (CTD) of the large subunit of RNA polymerase II (RNAPII). As serine 5 is phosphorylated, these results are consistent with a block after the initiation step but before the elongation step of RNAPII-based transcription. Repression of PGC gene expression occurs despite an apparently permissive chromatin environment. Phosphorylation of CTD-serine 2 and expression of zygotic mRNAs in PGCs are first detected at neurula, some 10 hours after MBT, indicating that transcription is significantly delayed in the germ cell lineage. Significantly, Oct-91, a POU subclass V transcription factor related to mammalian Oct3/4, is among the earliest zygotic transcripts detected in PGCs and is a likely mediator of pluripotency. Our findings suggest that PGCs are unable to respond to maternally inherited endoderm determinants because RNAPII activity is transiently blocked while these determinants are present. Our results in a vertebrate system further support the concept that one strategy used repeatedly during evolution for preserving the germline is RNAPII repression.

Indexed as

AnimalsBase SequenceDNA PrimersEmbryonic Stem CellsFemaleGene Expression Regulation, DevelopmentalGerm CellsMaleModels, BiologicalOctamer Transcription FactorsOogenesisPluripotent Stem CellsRNA Polymerase IIT-Box Domain ProteinsTranscription, GeneticXenopusDNA PrimersOctamer Transcription FactorsRNA Polymerase IIT-Box Domain ProteinsVegT protein, XenopusXenopus Proteins

Identifiers

PMID20110330
PMCPMC2827618
OpenAlexW2165268512

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.