Evidence map›Paper›PMID 20107511›Full record

ArticlePloS one2010

RNAa is conserved in mammalian cells.

Vera Huang, Yi Qin, Ji Wang, Xiaoling Wang, Robert F Place, Guiting Lin, Tom F Lue, Long-Cheng Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 174 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Nucleic acid drugs: recent progress and future perspectives.Signal transduction and targeted therapy · 2024
    Review
  9. Article
  10. RNA activation in ticks.Scientific reports · 2023
    Article
  11. MiRNAs in Hematopoiesis and Acute Lymphoblastic Leukemia.International journal of molecular sciences · 2023
    Review
  12. RNA therapeutics: updates and future potential.Science China. Life sciences · 2023
    Review
  13. Review
  14. Review
  15. Small Activating RNA Modulation of the G Protein-Coupled Receptor for Cancer Treatment.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Let-7c increases BACE2 expression by RNAa and decreases Aβ production.American journal of translational research · 2022
    Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vera HuangHelen-Diller Comprehensive Cancer Center, University of California San Francisco, San Francisco, California, USA.
Yi Qin
Ji Wang
Xiaoling Wang
Robert F Place
Guiting Lin
Tom F Lue
Long-Cheng Li
UCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of California, San Francisco · US

Funding

Transcriptional Activation by Small RNA: Mechanism and Design RulesR01GM090293 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LI, HAO, LI, LONG-CHENG · 2009 to 2013
$2.3M
Small RNA targeted gene activation for the treatment of prostate cancerR21CA131774 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LI, LONG-CHENG · 2008 to 2009
$382k
NCI NIH HHS 1R21CA131774-02NCI NIH HHS R21 CA131774NIGMS NIH HHS 1R01GM090293-0109
6 · The paper itself

Abstract

backgroundRNA activation (RNAa) is a newly discovered mechanism of gene activation triggered by small double-stranded RNAs termed 'small activating RNAs' (saRNAs). Thus far, RNAa has only been demonstrated in human cells and is unclear whether it is conserved in other mammals. METHODOLOGY/PRINCIPAL

findingsIn the present study, we evaluated RNAa in cells derived from four mammalian species including nonhuman primates (African green monkey and chimpanzee), mouse, and rat. Previously, we identified saRNAs leading to the activation of E-cadherin, p21, and VEGF in human cells. As the targeted sequences are highly conserved in primates, transfection of each human saRNA into African green monkey (COS1) and chimpanzee (WES) cells also resulted in induction of the intended gene. Additional saRNAs targeting clinically relevant genes including p53, PAR4, WT1, RB1, p27, NKX3-1, VDR, IL2, and pS2 were also designed and transfected into COS1 and WES cells. Of the nine genes, p53, PAR4, WT1, and NKX3-1 were induced by their corresponding saRNAs. We further extended our analysis of RNAa into rodent cell types. We identified two saRNAs that induced the expression of mouse Cyclin B1 in NIH/3T3 and TRAMP C1 cells, which led to increased phosphorylation of histone H3, a downstream marker for chromosome condensation and entry into mitosis. We also identified two saRNAs that activated the expression of CXCR4 in primary rat adipose-derived stem cells. CONCLUSIONS/SIGNIFICANCE: This study demonstrates that RNAa exists in mammalian species other than human. Our findings also suggest that nonhuman primate disease models may have clinical applicability for validating RNAa-based drugs.

Indexed as

AnimalsBase SequenceBlotting, WesternCell LineChlorocebus aethiopsEnzyme-Linked Immunosorbent AssayFlow CytometryHumansMiceMolecular Sequence DataPan troglodytesPromoter Regions, GeneticRatsRNASequence Homology, Nucleic AcidRNA

Identifiers

PMID20107511
PMCPMC2809750
OpenAlexW2028141043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.