Evidence map›Paper›PMID 20104909›Full record

ArticleChemical research in toxicology2010

Polymerase incorporation and miscoding properties of 5-chlorouracil.

Cherine H Kim, Agus Darwanto, Jacob A Theruvathu, Jason L Herring, Lawrence C Sowers

Abstract read
In one paragraph

Article in Chemical research in toxicology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Cherine H KimDepartment of Basic Sciences, School of Medicine, Loma Linda University, Loma Linda, California 92350, USA.
Agus Darwanto
Jacob A Theruvathu
Jason L Herring
Lawrence C Sowers
Loma Linda University · US

Funding

INFIDELITY OF CYTOSINE METHYLATION AND HUMAN CANCERR01CA084487 · NCI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI SOWERS, LAWRENCE C · 2000 to 2016
$3.6M
BASE PAIRING AND MUTAGENESISR01GM041336 · NIGMS · LOMA LINDA UNIVERSITY · PI SOWERS, LAWRENCE C · 1995 to 2007
$2.3M
BASE PAIRING AND MUTAGENESIS--NMR STUDYR29GM041336 · NIGMS · CITY OF HOPE NATIONAL MEDICAL CENTER · PI SOWERS, LAWRENCE C · 1989 to 1993
–
NCI NIH HHS CA084487NCI NIH HHS R01 CA084487NIGMS NIH HHS GM41336NIGMS NIH HHS R01 GM041336
6 · The paper itself

Abstract

Inflammation-mediated hypochlorous acid (HOCl) can damage DNA, DNA precursors, and other biological molecules, thereby producing an array of damage products such as 5-chlorouracil (ClU). In this study, we prepared and studied 5-chloro-2'-deoxyuridine (CldU) and ClU-containing oligonucleotide templates. We demonstrate that human K-562 cells grown in culture with 10 muM CldU incorporate substantial amounts of CldU without significant toxicity. When in the template, ClU residues pair with dATP but also with dGTP, in a pH-dependent manner with incorporation by human polymerase beta, avian myeloblastosis virus reverse transcriptase (AMV-RT), and Escherichia coli Klenow fragment (exo(-)) polymerase. The enhanced miscoding of ClU is attributed to the electron-withdrawing 5-chlorine substituent that promotes the formation of an ionized ClU-G mispair. When mispaired with G, ClU is targeted for removal by human glycosylases. The formation, incorporation, and repair of ClU could promote transition mutations and other forms of heritable DNA damage.

Indexed as

Base Pair MismatchDeoxyuridineDNA DamageDNA GlycosylasesDNA Mismatch RepairDNA Polymerase betaDNA Polymerase IHumansHydrogen-Ion ConcentrationK562 CellsKineticsRNA-Directed DNA PolymeraseUracil5-chloro-2'-deoxyuridine5-chlorouracilDeoxyuridineDNA GlycosylasesDNA Polymerase betaDNA Polymerase IRNA-Directed DNA PolymeraseUracil

Identifiers

PMID20104909
PMCPMC2856725
OpenAlexW2075799014

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.