ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2010
Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 3 of them syntheses that pooled it.
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Who cites it
98 citing papers in PubMed, 3 syntheses or guidelines pooled it, 231 citations in OpenAlex.
- Developing resistance to Fusarium wilt in chickpea: From identifying meta-QTLs to molecular breeding.The plant genome · 2025Pooled it
- Meta QTL analysis for dissecting abiotic stress tolerance in chickpea.BMC genomics · 2024Pooled it
- Exploring Chickpea Germplasm Diversity for Broadening the Genetic Base Utilizing Genomic Resourses.Frontiers in genetics · 2022Pooled it
- Advancing Chickpea Breeding: Omics Insights for Targeted Abiotic Stress Mitigation and Genetic Enhancement.Biochemical genetics · 2025Review
- An overview of heat stress in Chickpea (Molecular breeding : new strategies in plant improvement · 2025Review
- Chickpea: Its Origin, Distribution, Nutrition, Benefits, Breeding, and Symbiotic Relationship withPlants (Basel, Switzerland) · 2024Review
- Impact of low light intensity on biomass partitioning and genetic diversity in a chickpea mapping population.Frontiers in plant science · 2024Article
- SSR Genotyping and Marker-Trait Association with Yield Components in a Kazakh Germplasm Collection of Chickpea (Biomolecules · 2023Article
- Genetic mapping of quantitative trait loci associated with drought tolerance in chickpea (Cicer arietinum L.).Scientific reports · 2023Article
- Disentangling potential genotypes for macro and micro nutrients and polymorphic markers in Chickpea.Scientific reports · 2023Article
- Genome-wide discovery of di-nucleotide SSR markers based on whole genome re-sequencing data of Cicer arietinum L. and Cicer reticulatum Ladiz.Scientific reports · 2023Article
- Breeding and Genomic Approaches towards Development of Fusarium Wilt Resistance in Chickpea.Life (Basel, Switzerland) · 2023Review
- Article
- Underutilized legumes: nutrient status and advanced breeding approaches for qualitative and quantitative enhancement.Frontiers in nutrition · 2023Review
- Molecular Breeding and Drought Tolerance in Chickpea.Life (Basel, Switzerland) · 2022Review
- Chickpea (Plants (Basel, Switzerland) · 2022Review
- Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea.Plant biotechnology journal · 2022Article
- Defining the mutation sites in chickpea nodulation mutants PM233 and PM405.BMC plant biology · 2022Article
- Genome-wide association mapping of nutritional traits for designing superior chickpea varieties.Frontiers in plant science · 2022Article
- Genetic mapping of QTLs for drought tolerance in chickpea (Frontiers in genetics · 2022Article
38 more citing papers are in PubMed but not listed here.
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Authors and funding
15 authors at 9 institutions in 5 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This study presents the development and mapping of simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers in chickpea. The mapping population is based on an inter-specific cross between domesticated and non-domesticated genotypes of chickpea (Cicer arietinum ICC 4958 x C. reticulatum PI 489777). This same population has been the focus of previous studies, permitting integration of new and legacy genetic markers into a single genetic map. We report a set of 311 novel SSR markers (designated ICCM-ICRISAT chickpea microsatellite), obtained from an SSR-enriched genomic library of ICC 4958. Screening of these SSR markers on a diverse panel of 48 chickpea accessions provided 147 polymorphic markers with 2-21 alleles and polymorphic information content value 0.04-0.92. Fifty-two of these markers were polymorphic between parental genotypes of the inter-specific population. We also analyzed 233 previously published (H-series) SSR markers that provided another set of 52 polymorphic markers. An additional 71 gene-based SNP markers were developed from transcript sequences that are highly conserved between chickpea and its near relative Medicago truncatula. By using these three approaches, 175 new marker loci along with 407 previously reported marker loci were integrated to yield an improved genetic map of chickpea. The integrated map contains 521 loci organized into eight linkage groups that span 2,602 cM, with an average inter-marker distance of 4.99 cM. Gene-based markers provide anchor points for comparing the genomes of Medicago and chickpea, and reveal extended synteny between these two species. The combined set of genetic markers and their integration into an improved genetic map should facilitate chickpea genetics and breeding, as well as translational studies between chickpea and Medicago.
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