Evidence map›Paper›PMID 20098708›Full record

ArticlePloS one2010

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042.

Roy R Chaudhuri, Mohammed Sebaihia, Jon L Hobman, Mark A Webber, Denisse L Leyton, Martin D Goldberg, Adam F Cunningham, Anthony Scott-Tucker, Paul R Ferguson, Christopher M Thomas and 10 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 190 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genomic Dissection of an EnteroaggregativeInternational journal of molecular sciences · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Characterization of UropathogenicMicroorganisms · 2022
    Article
  18. Article
  19. Article
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 9 institutions in 2 countries.

Roy R ChaudhuriDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Mohammed Sebaihia
Jon L Hobman
Mark A Webber
Denisse L Leyton
Martin D Goldberg
Adam F Cunningham
Anthony Scott-Tucker
Paul R Ferguson
Christopher M Thomas
Gad Frankel
Christoph M Tang
Edward G Dudley
Ian S Roberts
David A Rasko
Mark J Pallen
Julian Parkhill
James P Nataro
Nicholas R Thomson
Ian R Henderson
University of Birmingham · GBGenomics (United Kingdom) · GBImperial College London · GBUniversity of Maryland, Baltimore · USPennsylvania State University · USUniversity of Cambridge · GBUniversity of Manchester · GBUniversity of Nottingham · GBWellcome Sanger Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C510075/1Medical Research Council G0801209Wellcome Trust
6 · The paper itself

Abstract

backgroundEscherichia coli can experience a multifaceted life, in some cases acting as a commensal while in other cases causing intestinal and/or extraintestinal disease. Several studies suggest enteroaggregative E. coli are the predominant cause of E. coli-mediated diarrhea in the developed world and are second only to Campylobacter sp. as a cause of bacterial-mediated diarrhea. Furthermore, enteroaggregative E. coli are a predominant cause of persistent diarrhea in the developing world where infection has been associated with malnourishment and growth retardation.

methodsIn this study we determined the complete genomic sequence of E. coli 042, the prototypical member of the enteroaggregative E. coli, which has been shown to cause disease in volunteer studies. We performed genomic and phylogenetic comparisons with other E. coli strains revealing previously uncharacterised virulence factors including a variety of secreted proteins and a capsular polysaccharide biosynthetic locus. In addition, by using Biolog Phenotype Microarrays we have provided a full metabolic profiling of E. coli 042 and the non-pathogenic lab strain E. coli K-12. We have highlighted the genetic basis for many of the metabolic differences between E. coli 042 and E. coli K-12.

conclusionThis study provides a genetic context for the vast amount of experimental and epidemiological data published thus far and provides a template for future diagnostic and intervention strategies.

Indexed as

Genome, BacterialAmino Acid SequenceAnti-Bacterial AgentsBacterial Outer Membrane ProteinsBase SequenceCarbonDNA PrimersEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsHost-Pathogen InteractionsHumansIronMicrobial Sensitivity TestsMolecular Sequence DataPhylogenyAnti-Bacterial AgentsBacterial Outer Membrane ProteinsCarbonDNA PrimersEscherichia coli ProteinsIronYtfM protein, E coli

Identifiers

PMID20098708
PMCPMC2808357
OpenAlexW1985783302

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.