Evidence map›Paper›PMID 20098687›Full record

ArticlePloS one2010

Crystal structure and substrate specificity of Drosophila 3,4-dihydroxyphenylalanine decarboxylase.

Qian Han, Haizhen Ding, Howard Robinson, Bruce M Christensen, Jianyong Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Crystal structure ofJournal of advanced research · 2020
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  8. Structural insights into the catalytic mechanism of Bacillus subtilis BacF.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Insect ArylalkylamineFrontiers in molecular biosciences · 2018
    Review
  14. Article
  15. Article
  16. Critical Analysis of the Melanogenic Pathway in Insects and Higher Animals.International journal of molecular sciences · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Qian HanDepartment of Biochemistry, Virginia Tech, Blacksburg, Virginia, United States of America.
Haizhen Ding
Howard Robinson
Bruce M Christensen
Jianyong Li
Virginia Tech · USBrookhaven National Laboratory · USUniversity of Wisconsin–Madison · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
IMMUNE RESPONSE OF MOSQUITOES TO FILARIAL WORMSR01AI019769 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CHRISTENSEN, BRUCE MARTIN · 1989 to 2011
$3.2M
IMMUNE RESPONSE OF MOSQUITOES TO FILARIAL WORMSR22AI019769 · NIAID · UNIVERSITY OF WISCONSIN MADISON · PI CHRISTENSEN, BRUCE MARTIN · 1985 to 1989
–
IMMUNE RESPONSE OF MOSQUITOES TO FILARIAL WORMSR37AI019769 · NIAID · UNIVERSITY OF WISCONSIN MADISON · PI CHRISTENSEN, BRUCE MARTIN · 1990 to 1999
–
NIAID NIH HHS AI 19769NIAID NIH HHS R01 AI019769NIAID NIH HHS R37 AI019769NIBIB NIH HHS P30 EB009998
6 · The paper itself

Abstract

background3,4-Dihydroxyphenylalanine decarboxylase (DDC), also known as aromatic L-amino acid decarboxylase, catalyzes the decarboxylation of a number of aromatic L-amino acids. Physiologically, DDC is responsible for the production of dopamine and serotonin through the decarboxylation of 3,4-dihydroxyphenylalanine and 5-hydroxytryptophan, respectively. In insects, both dopamine and serotonin serve as classical neurotransmitters, neuromodulators, or neurohormones, and dopamine is also involved in insect cuticle formation, eggshell hardening, and immune responses. PRINCIPAL

findingsIn this study, we expressed a typical DDC enzyme from Drosophila melanogaster, critically analyzed its substrate specificity and biochemical properties, determined its crystal structure at 1.75 Angstrom resolution, and evaluated the roles residues T82 and H192 play in substrate binding and enzyme catalysis through site-directed mutagenesis of the enzyme. Our results establish that this DDC functions exclusively on the production of dopamine and serotonin, with no activity to tyrosine or tryptophan and catalyzes the formation of serotonin more efficiently than dopamine.

conclusionsThe crystal structure of Drosophila DDC and the site-directed mutagenesis study of the enzyme demonstrate that T82 is involved in substrate binding and that H192 is used not only for substrate interaction, but for cofactor binding of drDDC as well. Through comparative analysis, the results also provide insight into the structure-function relationship of other insect DDC-like proteins.

Indexed as

Hydrogen-Ion ConcentrationAmino Acid SequenceAnimalsAromatic-L-Amino-Acid DecarboxylasesBase SequenceBiocatalysisCrystallography, X-RayDNA PrimersDrosophila melanogasterDrosophila ProteinsKineticsMolecular Sequence DataMutagenesis, Site-DirectedProtein ConformationSequence Homology, Amino AcidSubstrate Specificityaromatic L-amino acid decarboxylase, DrosophilaAromatic-L-Amino-Acid DecarboxylasesDNA PrimersDrosophila Proteins

Identifiers

PMID20098687
PMCPMC2809104
OpenAlexW1975855392

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.