Evidence map›Paper›PMID 20097740›Full record

ArticleEukaryotic cell2010

Comparative transcriptome analysis reveals novel roles of the Ras and cyclic AMP signaling pathways in environmental stress response and antifungal drug sensitivity in Cryptococcus neoformans.

Shinae Maeng, Young-Joon Ko, Gyu-Bum Kim, Kwang-Woo Jung, Anna Floyd, Joseph Heitman, Yong-Sun Bahn

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Eukaryotic cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 80 citations in OpenAlex.

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  13. Chaperone Networks in Fungal Pathogens of Humans.Journal of fungi (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Shinae MaengDepartment of Biotechnology, Center for Fungal Pathogenesis, Yonsei University, 134 Shinchon-dong, Seodaemun-gu, 120-749 Seoul, Republic of Korea.
Young-Joon Ko
Gyu-Bum Kim
Kwang-Woo Jung
Anna Floyd
Joseph Heitman
Yong-Sun Bahn
Yonsei University · KRDuke Medical Center · USDuke University Hospital · USSoongsil University · KR

Funding

Novel Antifungal Therapeutic ApproachesR01AI050438 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2001 to 2012
$3.3M
GPCR signaling cascades in Cryptococcus neoformansR21AI070230 · NIAID · DUKE UNIVERSITY · PI HEITMAN, JOSEPH · 2007 to 2008
$425k
NIAID NIH HHS R01 AI050438NIAID NIH HHS R01 AI50438NIAID NIH HHS R21 AI070230NIAID NIH HHS R21 AI70230
6 · The paper itself

Abstract

The cyclic AMP (cAMP) pathway plays a central role in the growth, differentiation, and virulence of pathogenic fungi, including Cryptococcus neoformans. Three upstream signaling regulators of adenylyl cyclase (Cac1), Ras, Aca1, and Gpa1, have been demonstrated to control the cAMP pathway in C. neoformans, but their functional relationship remains elusive. We performed a genome-wide transcriptome analysis with a DNA microarray using the ras1Delta, gpa1Delta, cac1Delta, aca1Delta, and pka1Delta pka2Delta mutants. The aca1Delta, gpa1Delta, cac1Delta, and pka1Delta pka2Delta mutants displayed similar transcriptome patterns, whereas the ras1Delta mutant exhibited transcriptome patterns distinct from those of the wild type and the cAMP mutants. Interestingly, a number of environmental stress response genes are modulated differentially in the ras1Delta and cAMP mutants. In fact, the Ras signaling pathway was found to be involved in osmotic and genotoxic stress responses and the maintenance of cell wall integrity via the Cdc24-dependent signaling pathway. Notably, the Ras and cAMP mutants exhibited hypersensitivity to a polyene drug, amphotericin B, without showing effects on ergosterol biosynthesis, which suggested a novel method of antifungal combination therapy. Among the cAMP-dependent gene products that we characterized, two small heat shock proteins, Hsp12 and Hsp122, were found to be involved in the polyene antifungal drug susceptibility of C. neoformans.

Indexed as

Gene Expression ProfilingAdaptor Proteins, Signal TransducingAdenylyl CyclasesAntifungal AgentsCadmium CompoundsCell Cycle ProteinsCell WallCluster AnalysisCongo RedCryptococcus neoformansCyclic AMPCyclic AMP-Dependent Protein KinasesDioxolesDNA DamageDown-RegulationDrug Resistance, FungalAdaptor Proteins, Signal TransducingAdenylyl CyclasesAntifungal AgentsCadmium Compoundscadmium sulfateCell Cycle ProteinsCongo RedCyclic AMPCyclic AMP-Dependent Protein KinasesDioxolesfludioxonilFungal ProteinsGTP-Binding Protein alpha SubunitsHeat-Shock ProteinsHydroxyureaMethyl MethanesulfonatePyrrolesPyruvaldehyderas ProteinsSulfatesSuperoxides

Identifiers

PMID20097740
PMCPMC2837985
OpenAlexW2150919198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.