Evidence map›Paper›PMID 20097056›Full record

ArticleBiosensors & bioelectronics2010

Label-free microarray imaging for direct detection of DNA hybridization and single-nucleotide mismatches.

Emre Ozkumur, Sunmin Ahn, Ayça Yalçin, Carlos A Lopez, Elif Cevik, Rostem J Irani, Charles DeLisi, Marcella Chiari, M Selim Unlü

Abstract readEvaluation Study
In one paragraph

Article in Biosensors & bioelectronics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  14. Multiplexed, rapid point of care platform to quantify allergen-specific IgE.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Emre OzkumurDepartment of Electrical & Computer Engineering, Boston University, Boston, MA 02215, USA.
Sunmin Ahn
Ayça Yalçin
Carlos A Lopez
Elif Cevik
Rostem J Irani
Charles DeLisi
Marcella Chiari
M Selim Unlü

Funding

High-throughput, Label-free Promoter Sequence DiscoveryR21GM074872 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI UNLU, M SELIM · 2006 to 2007
$428k
NIGMS NIH HHS R21 GM074872
6 · The paper itself

Abstract

A novel method is proposed for direct detection of DNA hybridization on microarrays. Optical interferometry is used for label-free sensing of biomolecular accumulation on glass surfaces, enabling dynamic detection of interactions. Capabilities of the presented method are demonstrated by high-throughput sensing of solid-phase hybridization of oligonucleotides. Hybridization of surface immobilized probes with 20 base pair-long target oligonucleotides was detected by comparing the label-free microarray images taken before and after hybridization. Through dynamic data acquisition during denaturation by washing the sample with low ionic concentration buffer, melting of duplexes with a single-nucleotide mismatch was distinguished from perfectly matching duplexes with high confidence interval (>97%). The presented technique is simple, robust, and accurate, and eliminates the need of using labels or secondary reagents to monitor the oligonucleotide hybridization.

Indexed as

Base Pair MismatchDNA Mutational AnalysisEquipment DesignEquipment Failure AnalysisIn Situ HybridizationOligonucleotide Array Sequence AnalysisPoint MutationPolymorphism, Single NucleotideReproducibility of ResultsSensitivity and SpecificityStaining and Labeling

Identifiers

PMID20097056
PMCPMC2824047

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.