Evidence map›Paper›PMID 20096988›Full record

ArticleBiophysical chemistry2010

Characterization of condensed plasmid DNA models for studying the direct effect of ionizing radiation.

Mandi Tsoi, Trinh T Do, Vicky Tang, Joseph A Aguilera, Christopher C Perry, Jamie R Milligan

Abstract read
In one paragraph

Article in Biophysical chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mandi TsoiDepartment of Radiology, University of California at San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0610, USA.
Trinh T Do
Vicky Tang
Joseph A Aguilera
Christopher C Perry
Jamie R Milligan

Funding

BIOLOGICALLY SIGNIFICANT DAMAGE IN DNAR01CA046295 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MILLIGAN, JAMIE · 1989 to 2011
$2.8M
NCI NIH HHS CA46295NCI NIH HHS R01 CA046295
6 · The paper itself

Abstract

We have examined the changes in physical properties of aqueous solutions of the plasmid pUC18 that take place on the addition of the cationic oligopeptide penta-arginine. An increase in sedimentation rate and static light scattering, and changes in the nucleic acid CD spectrum all suggest that this ligand acts to condense the plasmid. Dynamic light scattering suggests the hydrodynamic radii of the condensate particles are a few micrometers, ca. 50-fold larger than that of the monomeric plasmid. Condensation of the plasmid also produces a ca. 100-fold decrease in the strand break yield produced by gamma irradiation. This extensive protection against reactive intermediates in the bulk of the solution implies that condensed plasmid DNA may offer a model system with which to study the direct effect of ionizing radiation (ionization of the DNA itself). The use of peptide ligands as condensing agents in this application is attractive because the derivatives of several amino acids (particularly tryptophan and tyrosine) have been shown to modify the radiation chemistry of DNA extensively.

Indexed as

DNA, BacterialLigandsModels, ChemicalPeptidesPlasmidsRadiation, IonizingDNA, BacterialLigandsPeptides

Identifiers

PMID20096988
PMCPMC3181472

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.