Evidence map›Paper›PMID 20096118›Full record

ArticleBMC genomics2010

Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation.

Rebecca L Nugent, Anna Johnsson, Brian Fleharty, Madelaine Gogol, Yongtao Xue-Franzén, Chris Seidel, Anthony Ph Wright, Susan L Forsburg

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 54 citations in OpenAlex.

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  7. The histone code of the fungal genusMicrobial genomics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Rebecca L NugentMolecular and Computational Biology Section, University of Southern California, Los Angeles, California 90089-2910, USA.
Anna Johnsson
Brian Fleharty
Madelaine Gogol
Yongtao Xue-Franzén
Chris Seidel
Anthony Ph Wright
Susan L Forsburg
Stowers Institute for Medical Research · USKarolinska Institutet · SEUniversity of Southern California · USSödertörn University · SE

Funding

Genetic Analysis of MSM Protein Function in S. PombeR01GM059321 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FORSBURG, SUSAN L · 1999 to 2012
$4.7M
NIGMS NIH HHS R01 GM059321NIGMS NIH HHS R01 GM59321-09
6 · The paper itself

Abstract

backgroundHistone acetyltransferase enzymes (HATs) are implicated in regulation of transcription. HATs from different families may overlap in target and substrate specificity.

resultsWe isolated the elp3+ gene encoding the histone acetyltransferase subunit of the Elongator complex in fission yeast and characterized the phenotype of an Deltaelp3 mutant. We examined genetic interactions between Deltaelp3 and two other HAT mutants, Deltamst2 and Deltagcn5 and used whole genome microarray analysis to analyze their effects on gene expression.

conclusionsComparison of phenotypes and expression profiles in single, double and triple mutants indicate that these HAT enzymes have overlapping functions. Consistent with this, overlapping specificity in histone H3 acetylation is observed. However, there is no evidence for overlap with another HAT enzyme, encoded by the essential mst1+ gene.

Indexed as

Gene Expression ProfilingAcetylationFungal ProteinsGene Expression Regulation, FungalHistone AcetyltransferasesMutationOligonucleotide Array Sequence AnalysisPhenotypeRNA, FungalSchizosaccharomycesFungal ProteinsHistone AcetyltransferasesRNA, Fungal

Identifiers

PMID20096118
PMCPMC2823694
OpenAlexW1980826599

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.