Evidence map›Paper›PMID 20093289›Full record

ArticleMicrobiology (Reading, England)2010

The Swedish new variant of Chlamydia trachomatis: genome sequence, morphology, cell tropism and phenotypic characterization.

Magnus Unemo, Helena M B Seth-Smith, Lesley T Cutcliffe, Rachel J Skilton, David Barlow, David Goulding, Kenneth Persson, Simon R Harris, Anne Kelly, Carina Bjartling and 4 more

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Host-Pathogen Interactions ofPathogens (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Article
  7. Rise and fall of the new variant ofSexually transmitted infections · 2020
    Article
  8. Article
  9. Microbial genomics · 2019
    Article
  10. The Finnish New Variant ofMicroorganisms · 2019
    Article
  11. Article
  12. Letter to the editor:Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2019
    Article
  13. Finnish new variant ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2019
    Article
  14. Ten years transmission of the new variant ofSexually transmitted infections · 2018
    Article
  15. Article
  16. Genetic Transformation of aFrontiers in cellular and infection microbiology · 2018
    Article
  17. First Detection ofThe open microbiology journal · 2018
    Article
  18. TheWellcome open research · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Magnus UnemoNational Reference Laboratory for Pathogenic Neisseria, Department of Laboratory Medicine, Clinical Microbiology, örebro University Hospital, örebro, Sweden.
Helena M B Seth-SmithPathogen Genomics, The Wellcome Trust Sanger Institute, Cambridgeshire, UK.
Lesley T CutcliffeMolecular Microbiology Group, University Medical School, Southampton General Hospital, Southampton, UK.
Rachel J SkiltonMolecular Microbiology Group, University Medical School, Southampton General Hospital, Southampton, UK.
David BarlowMolecular Microbiology Group, University Medical School, Southampton General Hospital, Southampton, UK.
David GouldingMicrobial Pathogenesis Electron Microscope Facility, The Wellcome Trust Sanger Institute, Cambridge, UK.
Kenneth PerssonDepartment of Clinical Microbiology, Malmö University Hospital, Malmö, Sweden.
Simon R HarrisPathogen Genomics, The Wellcome Trust Sanger Institute, Cambridgeshire, UK.
Anne KellyNational Reference Laboratory for Pathogenic Neisseria, Department of Laboratory Medicine, Clinical Microbiology, örebro University Hospital, örebro, Sweden.
Carina BjartlingDepartment of Obstetrics and Gynaecology, Malmö University Hospital, Malmö, Sweden.
Hans FredlundNational Reference Laboratory for Pathogenic Neisseria, Department of Laboratory Medicine, Clinical Microbiology, örebro University Hospital, örebro, Sweden.
Per OlcénNational Reference Laboratory for Pathogenic Neisseria, Department of Laboratory Medicine, Clinical Microbiology, örebro University Hospital, örebro, Sweden.
Nicholas R ThomsonPathogen Genomics, The Wellcome Trust Sanger Institute, Cambridgeshire, UK.
Ian N ClarkeMolecular Microbiology Group, University Medical School, Southampton General Hospital, Southampton, UK.

Funding

Wellcome TrustWellcome Trust 080348
6 · The paper itself

Abstract

Chlamydia trachomatis is a major cause of bacterial sexually transmitted infections worldwide. In 2006, a new variant of C. trachomatis (nvCT), carrying a 377 bp deletion within the plasmid, was reported in Sweden. This deletion included the targets used by the commercial diagnostic systems from Roche and Abbott. The nvCT is clonal (serovar/genovar E) and it spread rapidly in Sweden, undiagnosed by these systems. The degree of spread may also indicate an increased biological fitness of nvCT. The aims of this study were to describe the genome of nvCT, to compare the nvCT genome to all available C. trachomatis genome sequences and to investigate the biological properties of nvCT. An early nvCT isolate (Sweden2) was analysed by genome sequencing, growth kinetics, microscopy, cell tropism assay and antimicrobial susceptibility testing. It was compared with relevant C. trachomatis isolates, including a similar serovar E C. trachomatis wild-type strain that circulated in Sweden prior to the initially undetected expansion of nvCT. The nvCT genome does not contain any major genetic polymorphisms - the genes for central metabolism, development cycle and virulence are conserved - or phenotypic characteristics that indicate any altered biological fitness. This is supported by the observations that the nvCT and wild-type C. trachomatis infections are very similar in terms of epidemiological distribution, and that differences in clinical signs are only described, in one study, in women. In conclusion, the nvCT does not appear to have any altered biological fitness. Therefore, the rapid transmission of nvCT in Sweden was due to the strong diagnostic selective advantage and its introduction into a high-frequency transmitting population.

Indexed as

Genome, BacterialBase SequenceChlamydia InfectionsChlamydia trachomatisDiagnostic ErrorsHumansInclusion BodiesMaleMolecular Sequence DataPhenotypePlasmidsSpecies SpecificitySwedenTropism

Identifiers

PMID20093289
PMCPMC3541825

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.